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IGHG2
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:330.7 nTPM
HPA:11.6 nTPM
GTEx:330.7 nTPM
FANTOM5:0.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA001245
Glandular cells Medium


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 11.6
overview
Male, age 65
Small intestine sample 232
nTPM: 4.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 8.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 5.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 28.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 330.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 330.7
Samples: 187

Max nTPM: 4028.0
Min nTPM: 0.8
Std nTPM: 479.6
Median nTPM: 195.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 4028.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 3260.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1889.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1673.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1449.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1387.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1358.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1253.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1036.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1009.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 978.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 957.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 957.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 914.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 883.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 870.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 862.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 812.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 808.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 800.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 775.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 756.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 735.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 727.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 702.9
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 687.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 655.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 621.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 572.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 557.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 556.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 552.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 520.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 520.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 511.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 490.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 486.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 470.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 431.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 411.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 407.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 404.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 403.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 397.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 395.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 391.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 389.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 381.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 373.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 369.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 365.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 357.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 356.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 345.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 344.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 335.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 334.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 328.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 326.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 319.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 317.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 312.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 293.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 291.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 288.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 287.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 286.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 285.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 281.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 279.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 278.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 275.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 271.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 266.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 261.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 253.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 248.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 245.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 239.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 228.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 227.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 225.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 223.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 222.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 221.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 214.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 213.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 212.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 203.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 196.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 196.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 196.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 195.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 195.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 187.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 183.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 180.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 179.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 178.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 175.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 175.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 170.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 169.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 162.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 160.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 158.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 153.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 153.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 149.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 149.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 146.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 145.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 143.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 136.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 135.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 133.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 131.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 130.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 122.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 121.5
GTEX-1192X-2526-SM-59868 50-59 years, male 116.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 111.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 110.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 110.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 105.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 104.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 103.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 102.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 98.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 96.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 94.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 87.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 86.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 80.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 79.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 77.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 75.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 71.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 71.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 70.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 70.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 67.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 62.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 57.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 56.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 51.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 49.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 47.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 46.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 43.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 43.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 42.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 41.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 41.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 39.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 38.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 36.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 36.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 34.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 32.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 32.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 30.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 27.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 26.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 24.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 21.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 19.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 15.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 13.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 13.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 13.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 9.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 9.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 6.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 6.6
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 6.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 5.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 5.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 5.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 4.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 3.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 3.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 3.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 3.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 0.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 0.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 0.6
FF:10024-101D6 15,40,85 years, mixed 0.6

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