MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:87984.2 nTPM
HPA:87984.2 nTPM
GTEx:53683.8 nTPM
Pig:24136.2 nTPM
Mouse:12901.5 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 87984.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 83882.8
2586 Male, age 75, left hemisphere 91729.5
2219 Male, age 76, both hemispheres 88963.7
2666 Male, age 74, left hemisphere 88461.6
1870 Female, age 42, unknown 85107.4
1833 Male, age 53, unknown 83576.8
2828 Female, age 72, unknown 82534.4
1830 Male, age 51, unknown 81768.2
1827 Male, age 72, unknown 79090.1
2019 Male, age 18, unknown 78980.3
2411 Female, age 72, unknown 78615.6
Dorsal raphe nucleus
nTPM: 79404.9
1828 Male, age 53, unknown 82298.8
2047 Male, age 72, unknown 81209.0
2750 Male, age 76, both hemispheres 80028.2
2016 Female, age 72, unknown 78704.6
2298 Female, age 72, unknown 74783.7
Inferior colliculus
nTPM: 83394.4
2849 Male, age 72, unknown 92862.5
1890 Male, age 53, unknown 83169.6
1848 Female, age 42, unknown 81443.1
2097 Female, age 72, unknown 76102.5
Median raphe nucleus
nTPM: 87984.2
2220 Male, age 76, midline 87984.2
Pedunculopontine tegmental nucleus
nTPM: 83445.8
2338 Male, age 61, both hemispheres 87671.4
2334 Male, age 80, both hemispheres 84354.0
1921 Female, age 85, both hemispheres 78312.1
Periaquaductal grey, anterior
nTPM: 78583.6
2502 Female, age 75, unknown 79391.0
1795 Male, age 51, unknown 78943.0
1947 Male, age 18, unknown 77416.8
Periaquaductal grey, dorsal
nTPM: 83189.2
2850 Male, age 76, both hemispheres 92581.3
2464 Female, age 72, unknown 80799.6
1840 Male, age 53, unknown 79723.0
1831 Male, age 72, unknown 79653.0
Periaquaductal grey, lateral
nTPM: 77930.9
2140 Male, age 76, both hemispheres 80034.3
2053 Male, age 18, unknown 78412.4
2272 Male, age 74, both hemispheres 75346.1
Pretectal area
nTPM: 80921.8
2667 Female, age 75, unknown 86599.3
1944 Female, age 72, unknown 84315.6
1817 Female, age 42, unknown 82790.5
1816 Male, age 51, unknown 82613.7
2007 Male, age 72, unknown 82409.5
1815 Male, age 53, unknown 81997.2
2825 Male, age 18, unknown 81289.8
2407 Male, age 75, both hemispheres 79614.2
2224 Female, age 72, unknown 76869.9
2316 Male, age 76, right hemisphere 76363.6
2273 Male, age 74, both hemispheres 75276.4
Red nucleus
nTPM: 83437.8
2503 Female, age 72, unknown 86733.2
1865 Male, age 51, unknown 86356.2
2588 Male, age 74, left hemisphere 86098.0
2584 Male, age 75, left hemisphere 85814.9
1954 Female, age 42, unknown 83913.2
2823 Male, age 76, right hemisphere 83483.1
2725 Female, age 75, unknown 82559.6
2769 Male, age 72, unknown 82048.9
2785 Male, age 18, unknown 81922.6
2227 Male, age 72, unknown 81886.3
1904 Male, age 53, unknown 81664.3
1821 Female, age 72, unknown 78773.1
Substantia nigra
nTPM: 83946.9
2699 Male, age 18, unknown 98629.6
2665 Male, age 74, both hemispheres 92088.6
1916 Female, age 42, unknown 86293.4
1941 Male, age 53, unknown 82119.9
1889 Female, age 72, unknown 81788.8
2583 Male, age 75, right hemisphere 81459.2
2241 Male, age 72, unknown 79944.1
2409 Female, age 72, unknown 79607.1
1851 Male, age 51, unknown 79373.8
2590 Female, age 75, unknown 78164.2
Superior colliculus
nTPM: 80943.2
2664 Male, age 75, both hemispheres 87698.6
2587 Male, age 74, left hemisphere 82512.0
2087 Female, age 72, unknown 81837.1
1913 Female, age 42, unknown 80971.8
1895 Male, age 76, right hemisphere 80149.1
1995 Male, age 72, unknown 79924.4
1839 Male, age 51, unknown 79857.9
2668 Female, age 75, unknown 79757.5
1796 Male, age 53, unknown 79000.0
2261 Male, age 18, unknown 77723.4
Ventral tegmental area
nTPM: 81571.2
2218 Male, age 76, both hemispheres 86098.9
2223 Female, age 72, unknown 82984.7
1942 Male, age 51, unknown 81309.9
1915 Female, age 42, unknown 80048.7
2021 Male, age 53, unknown 79927.1
2410 Female, age 72, unknown 79057.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53683.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53683.8
Samples: 139

Max nTPM: 220793.6
Min nTPM: 7248.1
Std nTPM: 41467.1
Median nTPM: 40466.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 220793.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 210972.4
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 175761.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 158194.8
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 155197.8
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 138989.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 138043.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 137951.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 136015.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 130452.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 129578.7
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MIDBRAIN - Pig RNA-seqi
Average nTPM 24136.2
Pig sample Sample description nTPM
Midbrain
nTPM: 24136.2
Samples: 4

Max nTPM: 32334.6
Min nTPM: 18182.2
Sample A Female 18182.2
Sample B Female 32334.6
Sample C Male 25488.1
Sample D Male 20540.0
Periaqueductal gray
nTPM: 16762.4
Samples: 3

Max nTPM: 18233.9
Min nTPM: 15243.4
Sample B Female 18233.9
Sample C Male 16809.8
Sample D Male 15243.4
Substantia nigra
nTPM: 19693.2
Samples: 4

Max nTPM: 23372.3
Min nTPM: 14318.4
Sample A Female 23372.3
Sample B Female 18616.3
Sample C Male 22465.9
Sample D Male 14318.4
Superior colliculi
nTPM: 20257.2
Samples: 4

Max nTPM: 26326.3
Min nTPM: 8205.9
Sample A Female 21381.1
Sample B Female 8205.9
Sample C Male 26326.3
Sample D Male 25115.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12901.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 12901.6
Samples: 4

Max nTPM: 14388.8
Min nTPM: 12104.1
Sample A Male 14388.8
Sample B Male 12633.6
Sample C Female 12104.1
Sample D Female 12479.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.