MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:29.1 nTPM
HPA:29.1 nTPM
GTEx:31.5 nTPM
FANTOM5:2.5 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.3
1870 Female, age 42, unknown 19.5
1833 Male, age 53, unknown 18.7
2666 Male, age 74, left hemisphere 18.7
2019 Male, age 18, unknown 18.5
1830 Male, age 51, unknown 18.4
2828 Female, age 72, unknown 18.2
1827 Male, age 72, unknown 17.9
2411 Female, age 72, unknown 17.7
2219 Male, age 76, both hemispheres 17.5
2586 Male, age 75, left hemisphere 17.4
Dorsal raphe nucleus
nTPM: 24.2
2298 Female, age 72, unknown 34.5
2016 Female, age 72, unknown 27.7
1828 Male, age 53, unknown 21.8
2047 Male, age 72, unknown 19.3
2750 Male, age 76, both hemispheres 17.8
Inferior colliculus
nTPM: 18.8
1890 Male, age 53, unknown 20.8
2849 Male, age 72, unknown 18.5
1848 Female, age 42, unknown 17.9
2097 Female, age 72, unknown 17.8
Median raphe nucleus
nTPM: 17.6
2220 Male, age 76, midline 17.6
Pedunculopontine tegmental nucleus
nTPM: 17.9
2334 Male, age 80, both hemispheres 18.4
2338 Male, age 61, both hemispheres 18.0
1921 Female, age 85, both hemispheres 17.4
Periaquaductal grey, anterior
nTPM: 23.2
1795 Male, age 51, unknown 30.3
1947 Male, age 18, unknown 20.3
2502 Female, age 75, unknown 19.0
Periaquaductal grey, dorsal
nTPM: 26.7
2850 Male, age 76, both hemispheres 41.9
1840 Male, age 53, unknown 24.1
1831 Male, age 72, unknown 21.0
2464 Female, age 72, unknown 19.6
Periaquaductal grey, lateral
nTPM: 29.1
2272 Male, age 74, both hemispheres 38.0
2140 Male, age 76, both hemispheres 29.6
2053 Male, age 18, unknown 19.7
Pretectal area
nTPM: 19.4
2273 Male, age 74, both hemispheres 30.0
2224 Female, age 72, unknown 21.1
2825 Male, age 18, unknown 19.8
2667 Female, age 75, unknown 19.0
1817 Female, age 42, unknown 18.5
2007 Male, age 72, unknown 17.9
1815 Male, age 53, unknown 17.7
2316 Male, age 76, right hemisphere 17.6
1816 Male, age 51, unknown 17.5
1944 Female, age 72, unknown 17.3
2407 Male, age 75, both hemispheres 17.3
Red nucleus
nTPM: 18.9
2227 Male, age 72, unknown 20.3
2769 Male, age 72, unknown 20.2
2785 Male, age 18, unknown 20.2
1954 Female, age 42, unknown 19.0
2725 Female, age 75, unknown 19.0
2503 Female, age 72, unknown 18.8
2584 Male, age 75, left hemisphere 18.7
1904 Male, age 53, unknown 18.6
1865 Male, age 51, unknown 18.2
2588 Male, age 74, left hemisphere 18.1
2823 Male, age 76, right hemisphere 18.0
1821 Female, age 72, unknown 17.8
Substantia nigra
nTPM: 18.2
2699 Male, age 18, unknown 20.3
2665 Male, age 74, both hemispheres 19.4
2590 Female, age 75, unknown 18.9
2409 Female, age 72, unknown 18.1
1851 Male, age 51, unknown 18.0
2241 Male, age 72, unknown 17.6
1916 Female, age 42, unknown 17.5
2583 Male, age 75, right hemisphere 17.5
1889 Female, age 72, unknown 17.2
1941 Male, age 53, unknown 17.2
Superior colliculus
nTPM: 19.1
1995 Male, age 72, unknown 23.5
2587 Male, age 74, left hemisphere 21.2
2668 Female, age 75, unknown 19.6
2261 Male, age 18, unknown 18.6
1895 Male, age 76, right hemisphere 18.4
2087 Female, age 72, unknown 18.4
1913 Female, age 42, unknown 18.2
1839 Male, age 51, unknown 18.1
1796 Male, age 53, unknown 18.0
2664 Male, age 75, both hemispheres 17.3
Ventral tegmental area
nTPM: 18.8
2021 Male, age 53, unknown 20.3
1915 Female, age 42, unknown 19.3
1942 Male, age 51, unknown 18.5
2410 Female, age 72, unknown 18.4
2218 Male, age 76, both hemispheres 18.3
2223 Female, age 72, unknown 18.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.5
Samples: 139

Max nTPM: 276.4
Min nTPM: 3.6
Std nTPM: 28.5
Median nTPM: 24.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 276.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 114.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 93.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 89.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 85.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 80.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 72.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 71.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 69.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 68.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 65.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.5
FF:10158-103A5 76 years, female 2.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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