MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:97.1 nTPM
HPA:97.1 nTPM
GTEx:85.4 nTPM
FANTOM5:96.5 Scaled Tags Per Million
Mouse:64.2 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 97.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 86.8
2586 Male, age 75, left hemisphere 92.2
2828 Female, age 72, unknown 88.5
1870 Female, age 42, unknown 87.3
2219 Male, age 76, both hemispheres 87.2
1833 Male, age 53, unknown 87.1
2666 Male, age 74, left hemisphere 87.1
1827 Male, age 72, unknown 86.8
1830 Male, age 51, unknown 85.7
2411 Female, age 72, unknown 85.5
2019 Male, age 18, unknown 80.7
Dorsal raphe nucleus
nTPM: 94.3
2047 Male, age 72, unknown 101.5
2016 Female, age 72, unknown 95.4
2298 Female, age 72, unknown 93.7
1828 Male, age 53, unknown 92.0
2750 Male, age 76, both hemispheres 89.0
Inferior colliculus
nTPM: 91.2
2849 Male, age 72, unknown 95.3
1890 Male, age 53, unknown 91.9
1848 Female, age 42, unknown 90.1
2097 Female, age 72, unknown 87.7
Median raphe nucleus
nTPM: 91.8
2220 Male, age 76, midline 91.8
Pedunculopontine tegmental nucleus
nTPM: 89.2
1921 Female, age 85, both hemispheres 91.2
2338 Male, age 61, both hemispheres 89.5
2334 Male, age 80, both hemispheres 87.0
Periaquaductal grey, anterior
nTPM: 95.6
1947 Male, age 18, unknown 102.4
1795 Male, age 51, unknown 97.6
2502 Female, age 75, unknown 86.7
Periaquaductal grey, dorsal
nTPM: 96.1
2850 Male, age 76, both hemispheres 101.9
1840 Male, age 53, unknown 101.4
2464 Female, age 72, unknown 91.0
1831 Male, age 72, unknown 90.0
Periaquaductal grey, lateral
nTPM: 97.1
2140 Male, age 76, both hemispheres 99.6
2053 Male, age 18, unknown 97.1
2272 Male, age 74, both hemispheres 94.5
Pretectal area
nTPM: 90.4
2273 Male, age 74, both hemispheres 98.4
2825 Male, age 18, unknown 97.1
2667 Female, age 75, unknown 96.1
2224 Female, age 72, unknown 95.8
2407 Male, age 75, both hemispheres 93.9
2316 Male, age 76, right hemisphere 88.0
1944 Female, age 72, unknown 87.3
1816 Male, age 51, unknown 86.4
1815 Male, age 53, unknown 85.5
1817 Female, age 42, unknown 84.7
2007 Male, age 72, unknown 81.3
Red nucleus
nTPM: 86.7
2725 Female, age 75, unknown 90.8
2227 Male, age 72, unknown 88.7
2769 Male, age 72, unknown 88.4
2503 Female, age 72, unknown 87.9
2823 Male, age 76, right hemisphere 87.8
1954 Female, age 42, unknown 87.0
1865 Male, age 51, unknown 86.8
2584 Male, age 75, left hemisphere 86.3
1904 Male, age 53, unknown 86.2
1821 Female, age 72, unknown 86.0
2588 Male, age 74, left hemisphere 84.0
2785 Male, age 18, unknown 80.0
Substantia nigra
nTPM: 87.6
2699 Male, age 18, unknown 95.5
2665 Male, age 74, both hemispheres 90.5
2583 Male, age 75, right hemisphere 88.6
1851 Male, age 51, unknown 87.9
1916 Female, age 42, unknown 86.3
2241 Male, age 72, unknown 86.2
1889 Female, age 72, unknown 86.0
2409 Female, age 72, unknown 85.1
2590 Female, age 75, unknown 85.1
1941 Male, age 53, unknown 84.5
Superior colliculus
nTPM: 88.2
2664 Male, age 75, both hemispheres 95.2
1995 Male, age 72, unknown 90.7
1839 Male, age 51, unknown 88.6
2668 Female, age 75, unknown 88.3
1796 Male, age 53, unknown 87.4
1895 Male, age 76, right hemisphere 86.6
1913 Female, age 42, unknown 86.6
2587 Male, age 74, left hemisphere 86.4
2087 Female, age 72, unknown 86.3
2261 Male, age 18, unknown 86.3
Ventral tegmental area
nTPM: 90.0
2021 Male, age 53, unknown 95.8
1915 Female, age 42, unknown 91.0
1942 Male, age 51, unknown 90.6
2223 Female, age 72, unknown 88.9
2218 Male, age 76, both hemispheres 87.1
2410 Female, age 72, unknown 86.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 85.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.4
Samples: 139

Max nTPM: 186.6
Min nTPM: 21.8
Std nTPM: 29.4
Median nTPM: 84.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 186.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 173.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 154.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 151.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 148.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 145.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 143.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 142.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 138.2
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 136.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 134.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 96.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.5
FF:10158-103A5 76 years, female 96.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 64.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 64.2
Samples: 4

Max nTPM: 71.9
Min nTPM: 57.7
Sample A Male 62.2
Sample B Male 57.7
Sample C Female 64.8
Sample D Female 71.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71656927 Antisense, RP_050927_04_E09, Mouse strain C57BL/6J (56 days, male) 0.2

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