MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:167.9 nTPM
HPA:167.9 nTPM
GTEx:170.7 nTPM
FANTOM5:95.3 Scaled Tags Per Million
Mouse:70.5 nTPM
Allen mouse:6.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 167.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 161.4
1870 Female, age 42, unknown 165.7
2666 Male, age 74, left hemisphere 165.5
2411 Female, age 72, unknown 164.8
2586 Male, age 75, left hemisphere 164.0
1827 Male, age 72, unknown 163.2
1830 Male, age 51, unknown 163.2
1833 Male, age 53, unknown 162.7
2019 Male, age 18, unknown 161.6
2828 Female, age 72, unknown 160.4
2219 Male, age 76, both hemispheres 142.8
Dorsal raphe nucleus
nTPM: 161.0
2298 Female, age 72, unknown 169.1
2047 Male, age 72, unknown 165.0
2750 Male, age 76, both hemispheres 163.2
1828 Male, age 53, unknown 155.8
2016 Female, age 72, unknown 151.9
Inferior colliculus
nTPM: 163.3
2849 Male, age 72, unknown 166.1
1848 Female, age 42, unknown 165.6
1890 Male, age 53, unknown 162.3
2097 Female, age 72, unknown 159.2
Median raphe nucleus
nTPM: 155.5
2220 Male, age 76, midline 155.5
Pedunculopontine tegmental nucleus
nTPM: 154.3
2334 Male, age 80, both hemispheres 161.5
2338 Male, age 61, both hemispheres 150.9
1921 Female, age 85, both hemispheres 150.6
Periaquaductal grey, anterior
nTPM: 159.0
1947 Male, age 18, unknown 162.3
2502 Female, age 75, unknown 162.0
1795 Male, age 51, unknown 152.8
Periaquaductal grey, dorsal
nTPM: 153.6
1840 Male, age 53, unknown 157.6
2850 Male, age 76, both hemispheres 154.0
2464 Female, age 72, unknown 153.4
1831 Male, age 72, unknown 149.3
Periaquaductal grey, lateral
nTPM: 152.3
2053 Male, age 18, unknown 153.4
2272 Male, age 74, both hemispheres 151.7
2140 Male, age 76, both hemispheres 151.6
Pretectal area
nTPM: 157.4
2007 Male, age 72, unknown 168.7
1817 Female, age 42, unknown 166.6
2667 Female, age 75, unknown 162.5
1815 Male, age 53, unknown 159.1
2825 Male, age 18, unknown 158.5
1816 Male, age 51, unknown 155.8
2407 Male, age 75, both hemispheres 154.3
2224 Female, age 72, unknown 154.1
1944 Female, age 72, unknown 151.7
2316 Male, age 76, right hemisphere 151.0
2273 Male, age 74, both hemispheres 149.1
Red nucleus
nTPM: 167.9
1821 Female, age 72, unknown 176.7
2769 Male, age 72, unknown 175.1
2227 Male, age 72, unknown 171.2
2785 Male, age 18, unknown 170.6
1904 Male, age 53, unknown 169.6
2588 Male, age 74, left hemisphere 168.5
1865 Male, age 51, unknown 167.8
2503 Female, age 72, unknown 167.0
1954 Female, age 42, unknown 165.5
2823 Male, age 76, right hemisphere 163.1
2584 Male, age 75, left hemisphere 160.3
2725 Female, age 75, unknown 159.8
Substantia nigra
nTPM: 152.5
1889 Female, age 72, unknown 163.9
2665 Male, age 74, both hemispheres 159.2
1916 Female, age 42, unknown 158.3
2583 Male, age 75, right hemisphere 157.0
1851 Male, age 51, unknown 156.7
1941 Male, age 53, unknown 155.9
2699 Male, age 18, unknown 149.8
2590 Female, age 75, unknown 148.1
2409 Female, age 72, unknown 140.6
2241 Male, age 72, unknown 135.5
Superior colliculus
nTPM: 159.4
2587 Male, age 74, left hemisphere 172.2
1839 Male, age 51, unknown 164.7
2668 Female, age 75, unknown 162.4
1895 Male, age 76, right hemisphere 162.0
2664 Male, age 75, both hemispheres 159.1
1796 Male, age 53, unknown 158.6
1995 Male, age 72, unknown 157.8
1913 Female, age 42, unknown 155.6
2261 Male, age 18, unknown 152.5
2087 Female, age 72, unknown 149.2
Ventral tegmental area
nTPM: 157.8
2223 Female, age 72, unknown 165.9
2410 Female, age 72, unknown 164.5
1915 Female, age 42, unknown 159.5
2218 Male, age 76, both hemispheres 154.3
1942 Male, age 51, unknown 152.7
2021 Male, age 53, unknown 150.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 170.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 170.7
Samples: 139

Max nTPM: 337.6
Min nTPM: 91.0
Std nTPM: 42.0
Median nTPM: 162.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 337.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 325.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 312.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 311.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 262.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 252.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 241.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 237.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 237.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 234.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 231.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 95.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.3
FF:10158-103A5 76 years, female 95.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 70.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 70.5
Samples: 4

Max nTPM: 84.1
Min nTPM: 57.6
Sample A Male 84.1
Sample B Male 67.3
Sample C Female 57.6
Sample D Female 72.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.1
69837974 Antisense, RP_050224_01_D02, Mouse strain C57BL/6J (56 days, male) 7.4
74819344 Antisense, RP_060315_02_E11, Mouse strain C57BL/6J (56 days, male) 4.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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