MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:81.5 nTPM
HPA:81.5 nTPM
GTEx:73.7 nTPM
FANTOM5:118.7 Scaled Tags Per Million
Pig:81.6 nTPM
Mouse:334.7 nTPM
Allen mouse:15.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 81.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.4
2019 Male, age 18, unknown 87.5
1870 Female, age 42, unknown 81.1
2666 Male, age 74, left hemisphere 79.6
2411 Female, age 72, unknown 78.6
1833 Male, age 53, unknown 78.4
2586 Male, age 75, left hemisphere 78.3
1827 Male, age 72, unknown 77.9
1830 Male, age 51, unknown 77.0
2828 Female, age 72, unknown 74.9
2219 Male, age 76, both hemispheres 70.5
Dorsal raphe nucleus
nTPM: 79.0
2750 Male, age 76, both hemispheres 81.0
1828 Male, age 53, unknown 80.3
2298 Female, age 72, unknown 80.1
2047 Male, age 72, unknown 77.7
2016 Female, age 72, unknown 75.9
Inferior colliculus
nTPM: 78.2
1890 Male, age 53, unknown 79.9
2097 Female, age 72, unknown 79.8
1848 Female, age 42, unknown 77.9
2849 Male, age 72, unknown 75.3
Median raphe nucleus
nTPM: 76.7
2220 Male, age 76, midline 76.7
Pedunculopontine tegmental nucleus
nTPM: 79.0
2334 Male, age 80, both hemispheres 79.7
2338 Male, age 61, both hemispheres 78.9
1921 Female, age 85, both hemispheres 78.5
Periaquaductal grey, anterior
nTPM: 78.1
1947 Male, age 18, unknown 80.4
2502 Female, age 75, unknown 79.4
1795 Male, age 51, unknown 74.4
Periaquaductal grey, dorsal
nTPM: 74.7
2850 Male, age 76, both hemispheres 77.9
1840 Male, age 53, unknown 75.2
2464 Female, age 72, unknown 74.6
1831 Male, age 72, unknown 71.2
Periaquaductal grey, lateral
nTPM: 75.4
2053 Male, age 18, unknown 75.7
2140 Male, age 76, both hemispheres 75.3
2272 Male, age 74, both hemispheres 75.2
Pretectal area
nTPM: 80.3
2007 Male, age 72, unknown 87.4
1817 Female, age 42, unknown 87.3
1816 Male, age 51, unknown 83.9
1815 Male, age 53, unknown 83.3
2667 Female, age 75, unknown 82.1
1944 Female, age 72, unknown 80.9
2273 Male, age 74, both hemispheres 77.4
2316 Male, age 76, right hemisphere 76.5
2224 Female, age 72, unknown 75.9
2407 Male, age 75, both hemispheres 74.7
2825 Male, age 18, unknown 73.8
Red nucleus
nTPM: 81.5
1821 Female, age 72, unknown 90.8
1865 Male, age 51, unknown 86.7
1904 Male, age 53, unknown 83.6
1954 Female, age 42, unknown 82.0
2785 Male, age 18, unknown 81.2
2227 Male, age 72, unknown 80.3
2588 Male, age 74, left hemisphere 80.2
2503 Female, age 72, unknown 80.1
2725 Female, age 75, unknown 80.1
2769 Male, age 72, unknown 79.8
2823 Male, age 76, right hemisphere 79.3
2584 Male, age 75, left hemisphere 74.1
Substantia nigra
nTPM: 80.3
2409 Female, age 72, unknown 87.9
2241 Male, age 72, unknown 85.4
1889 Female, age 72, unknown 83.0
1916 Female, age 42, unknown 82.0
1851 Male, age 51, unknown 80.6
1941 Male, age 53, unknown 78.9
2665 Male, age 74, both hemispheres 77.2
2590 Female, age 75, unknown 76.6
2699 Male, age 18, unknown 76.4
2583 Male, age 75, right hemisphere 75.2
Superior colliculus
nTPM: 78.0
1895 Male, age 76, right hemisphere 82.1
2587 Male, age 74, left hemisphere 80.0
2668 Female, age 75, unknown 79.1
1839 Male, age 51, unknown 78.4
2087 Female, age 72, unknown 78.4
1913 Female, age 42, unknown 78.1
1995 Male, age 72, unknown 77.7
2261 Male, age 18, unknown 77.2
1796 Male, age 53, unknown 75.1
2664 Male, age 75, both hemispheres 73.7
Ventral tegmental area
nTPM: 78.3
2410 Female, age 72, unknown 84.7
1915 Female, age 42, unknown 79.8
2223 Female, age 72, unknown 79.4
2218 Male, age 76, both hemispheres 78.1
1942 Male, age 51, unknown 74.3
2021 Male, age 53, unknown 73.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 73.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.7
Samples: 139

Max nTPM: 123.8
Min nTPM: 41.7
Std nTPM: 13.7
Median nTPM: 72.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 123.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 112.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 104.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 103.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 100.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 99.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 98.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 98.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 97.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 96.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 96.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 118.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 118.7
FF:10158-103A5 76 years, female 118.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 81.6
Pig sample Sample description nTPM
Midbrain
nTPM: 77.9
Samples: 4

Max nTPM: 103.8
Min nTPM: 57.5
Sample A Female 75.6
Sample B Female 57.5
Sample C Male 103.8
Sample D Male 74.7
Periaqueductal gray
nTPM: 58.2
Samples: 3

Max nTPM: 67.6
Min nTPM: 52.8
Sample B Female 54.1
Sample C Male 67.6
Sample D Male 52.8
Substantia nigra
nTPM: 66.6
Samples: 4

Max nTPM: 89.7
Min nTPM: 48.0
Sample A Female 89.7
Sample B Female 48.0
Sample C Male 79.3
Sample D Male 49.2
Superior colliculi
nTPM: 81.6
Samples: 4

Max nTPM: 97.7
Min nTPM: 60.1
Sample A Female 90.0
Sample B Female 60.1
Sample C Male 97.7
Sample D Male 78.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 334.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 334.7
Samples: 4

Max nTPM: 340.7
Min nTPM: 327.1
Sample A Male 333.0
Sample B Male 340.7
Sample C Female 338.1
Sample D Female 327.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.5
71836805 Antisense, RP_051017_02_A10, Mouse strain C57BL/6J (56 days, male) 19.2
393213 Antisense, RP_040804_02_E01, Mouse strain C57BL/6J (56 days, male) 11.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.