MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:17.4 nTPM
HPA:17.4 nTPM
GTEx:17.2 nTPM
FANTOM5:3.8 Scaled Tags Per Million
Mouse:52.6 nTPM
Allen mouse:5.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.8
2411 Female, age 72, unknown 13.3
2219 Male, age 76, both hemispheres 11.9
1870 Female, age 42, unknown 11.6
1833 Male, age 53, unknown 11.2
2586 Male, age 75, left hemisphere 11.2
2666 Male, age 74, left hemisphere 11.1
1830 Male, age 51, unknown 10.8
1827 Male, age 72, unknown 10.1
2828 Female, age 72, unknown 9.1
2019 Male, age 18, unknown 7.6
Dorsal raphe nucleus
nTPM: 16.8
1828 Male, age 53, unknown 22.8
2047 Male, age 72, unknown 22.3
2298 Female, age 72, unknown 15.2
2016 Female, age 72, unknown 12.2
2750 Male, age 76, both hemispheres 11.3
Inferior colliculus
nTPM: 16.3
1890 Male, age 53, unknown 20.4
2097 Female, age 72, unknown 18.0
1848 Female, age 42, unknown 14.9
2849 Male, age 72, unknown 12.1
Median raphe nucleus
nTPM: 17.4
2220 Male, age 76, midline 17.4
Pedunculopontine tegmental nucleus
nTPM: 13.9
2334 Male, age 80, both hemispheres 19.7
1921 Female, age 85, both hemispheres 11.6
2338 Male, age 61, both hemispheres 10.3
Periaquaductal grey, anterior
nTPM: 10.3
1947 Male, age 18, unknown 11.7
2502 Female, age 75, unknown 11.3
1795 Male, age 51, unknown 7.8
Periaquaductal grey, dorsal
nTPM: 11.0
2850 Male, age 76, both hemispheres 11.6
1831 Male, age 72, unknown 11.5
2464 Female, age 72, unknown 10.8
1840 Male, age 53, unknown 10.1
Periaquaductal grey, lateral
nTPM: 8.5
2053 Male, age 18, unknown 9.2
2272 Male, age 74, both hemispheres 8.2
2140 Male, age 76, both hemispheres 8.1
Pretectal area
nTPM: 8.3
2224 Female, age 72, unknown 12.6
2825 Male, age 18, unknown 10.9
2667 Female, age 75, unknown 8.8
1817 Female, age 42, unknown 7.8
2007 Male, age 72, unknown 7.6
2316 Male, age 76, right hemisphere 7.6
1815 Male, age 53, unknown 7.4
2407 Male, age 75, both hemispheres 7.2
1944 Female, age 72, unknown 7.1
2273 Male, age 74, both hemispheres 6.9
1816 Male, age 51, unknown 6.8
Red nucleus
nTPM: 10.9
2584 Male, age 75, left hemisphere 14.4
1954 Female, age 42, unknown 14.2
2769 Male, age 72, unknown 12.3
2588 Male, age 74, left hemisphere 12.2
1821 Female, age 72, unknown 12.1
2227 Male, age 72, unknown 11.3
1865 Male, age 51, unknown 9.7
1904 Male, age 53, unknown 9.7
2503 Female, age 72, unknown 9.6
2725 Female, age 75, unknown 9.1
2823 Male, age 76, right hemisphere 8.4
2785 Male, age 18, unknown 7.4
Substantia nigra
nTPM: 15.4
1916 Female, age 42, unknown 22.9
2241 Male, age 72, unknown 18.7
1851 Male, age 51, unknown 17.5
2699 Male, age 18, unknown 17.4
2665 Male, age 74, both hemispheres 16.7
2409 Female, age 72, unknown 13.2
1941 Male, age 53, unknown 12.2
2583 Male, age 75, right hemisphere 12.2
1889 Female, age 72, unknown 12.1
2590 Female, age 75, unknown 10.6
Superior colliculus
nTPM: 8.4
1839 Male, age 51, unknown 11.1
2668 Female, age 75, unknown 10.6
1895 Male, age 76, right hemisphere 9.5
2587 Male, age 74, left hemisphere 8.8
2261 Male, age 18, unknown 8.5
2664 Male, age 75, both hemispheres 8.2
1796 Male, age 53, unknown 7.9
2087 Female, age 72, unknown 7.9
1913 Female, age 42, unknown 6.0
1995 Male, age 72, unknown 5.9
Ventral tegmental area
nTPM: 15.2
1915 Female, age 42, unknown 20.4
1942 Male, age 51, unknown 16.0
2410 Female, age 72, unknown 15.8
2021 Male, age 53, unknown 13.6
2223 Female, age 72, unknown 12.7
2218 Male, age 76, both hemispheres 12.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.2
Samples: 139

Max nTPM: 50.1
Min nTPM: 2.1
Std nTPM: 9.9
Median nTPM: 15.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 50.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 46.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 43.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 38.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 35.1
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 34.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 33.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 33.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 33.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 32.8
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 32.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.8
FF:10158-103A5 76 years, female 3.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 52.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 52.6
Samples: 4

Max nTPM: 55.7
Min nTPM: 46.9
Sample A Male 54.4
Sample B Male 55.7
Sample C Female 46.9
Sample D Female 53.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.3
69015422 Antisense, RP_050315_01_A01, Mouse strain C57BL/6J (56 days, male) 5.3

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The Human Protein Atlas

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