MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1741.7 nTPM
HPA:1741.7 nTPM
GTEx:2499.7 nTPM
FANTOM5:117.5 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1741.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1722.6
2411 Female, age 72, unknown 1756.4
1870 Female, age 42, unknown 1751.6
2019 Male, age 18, unknown 1731.3
2586 Male, age 75, left hemisphere 1727.2
2666 Male, age 74, left hemisphere 1724.8
2828 Female, age 72, unknown 1724.4
1827 Male, age 72, unknown 1707.6
1830 Male, age 51, unknown 1707.0
1833 Male, age 53, unknown 1699.3
2219 Male, age 76, both hemispheres 1696.6
Dorsal raphe nucleus
nTPM: 1722.1
2298 Female, age 72, unknown 1772.4
2016 Female, age 72, unknown 1718.2
2750 Male, age 76, both hemispheres 1717.1
1828 Male, age 53, unknown 1715.6
2047 Male, age 72, unknown 1687.2
Inferior colliculus
nTPM: 1721.8
2097 Female, age 72, unknown 1754.3
1890 Male, age 53, unknown 1741.5
1848 Female, age 42, unknown 1699.2
2849 Male, age 72, unknown 1692.1
Median raphe nucleus
nTPM: 1697.0
2220 Male, age 76, midline 1697.0
Pedunculopontine tegmental nucleus
nTPM: 1725.3
2334 Male, age 80, both hemispheres 1731.7
2338 Male, age 61, both hemispheres 1723.0
1921 Female, age 85, both hemispheres 1721.3
Periaquaductal grey, anterior
nTPM: 1733.3
2502 Female, age 75, unknown 1768.5
1795 Male, age 51, unknown 1717.6
1947 Male, age 18, unknown 1713.8
Periaquaductal grey, dorsal
nTPM: 1708.1
1840 Male, age 53, unknown 1724.0
2464 Female, age 72, unknown 1720.6
1831 Male, age 72, unknown 1706.4
2850 Male, age 76, both hemispheres 1681.4
Periaquaductal grey, lateral
nTPM: 1700.6
2053 Male, age 18, unknown 1727.8
2140 Male, age 76, both hemispheres 1696.8
2272 Male, age 74, both hemispheres 1677.4
Pretectal area
nTPM: 1713.8
2316 Male, age 76, right hemisphere 1757.3
1816 Male, age 51, unknown 1727.5
2224 Female, age 72, unknown 1724.3
2007 Male, age 72, unknown 1721.3
1815 Male, age 53, unknown 1715.6
1817 Female, age 42, unknown 1712.4
2825 Male, age 18, unknown 1706.5
2667 Female, age 75, unknown 1700.3
1944 Female, age 72, unknown 1698.8
2407 Male, age 75, both hemispheres 1698.8
2273 Male, age 74, both hemispheres 1688.6
Red nucleus
nTPM: 1738.6
2503 Female, age 72, unknown 1778.4
2227 Male, age 72, unknown 1762.5
1821 Female, age 72, unknown 1761.5
1904 Male, age 53, unknown 1757.9
2769 Male, age 72, unknown 1747.7
1865 Male, age 51, unknown 1731.3
2588 Male, age 74, left hemisphere 1730.3
2785 Male, age 18, unknown 1729.0
1954 Female, age 42, unknown 1727.9
2725 Female, age 75, unknown 1722.6
2584 Male, age 75, left hemisphere 1708.8
2823 Male, age 76, right hemisphere 1705.5
Substantia nigra
nTPM: 1734.7
1851 Male, age 51, unknown 1792.2
2409 Female, age 72, unknown 1772.1
2241 Male, age 72, unknown 1758.2
2665 Male, age 74, both hemispheres 1736.5
1916 Female, age 42, unknown 1729.8
2590 Female, age 75, unknown 1727.3
1889 Female, age 72, unknown 1725.9
2699 Male, age 18, unknown 1723.7
2583 Male, age 75, right hemisphere 1692.5
1941 Male, age 53, unknown 1689.1
Superior colliculus
nTPM: 1730.6
1995 Male, age 72, unknown 1756.2
2587 Male, age 74, left hemisphere 1752.6
1913 Female, age 42, unknown 1745.2
1796 Male, age 53, unknown 1732.3
2668 Female, age 75, unknown 1730.0
2664 Male, age 75, both hemispheres 1726.6
2261 Male, age 18, unknown 1724.4
2087 Female, age 72, unknown 1718.6
1895 Male, age 76, right hemisphere 1715.4
1839 Male, age 51, unknown 1704.4
Ventral tegmental area
nTPM: 1741.7
1915 Female, age 42, unknown 1777.5
2021 Male, age 53, unknown 1754.0
2223 Female, age 72, unknown 1746.5
1942 Male, age 51, unknown 1737.5
2410 Female, age 72, unknown 1732.6
2218 Male, age 76, both hemispheres 1702.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2499.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2499.7
Samples: 139

Max nTPM: 8627.9
Min nTPM: 705.3
Std nTPM: 1237.9
Median nTPM: 2204.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 8627.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 7982.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 7059.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 6408.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 5550.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 4616.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 4462.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 4445.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 4350.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 4229.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 4075.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 117.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 117.5
FF:10158-103A5 76 years, female 117.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.