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RPS29
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:3272.8 nTPM
HPA:1384.6 nTPM
GTEx:3272.8 nTPM
FANTOM5:85.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA004107
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 1384.6
overview
Male, age 65
Small intestine sample 232
nTPM: 1758.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1241.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1300.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1237.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3272.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 3272.8
Samples: 187

Max nTPM: 9792.2
Min nTPM: 1451.6
Std nTPM: 1232.4
Median nTPM: 2992.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 9792.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 7114.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 6963.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 6425.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 6305.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 6290.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 6145.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 5683.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 5658.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 5648.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 5607.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 5321.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 5299.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 5270.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 5215.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 5010.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 4995.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 4928.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 4855.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 4781.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 4746.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 4734.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 4638.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 4598.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 4573.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 4546.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 4450.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 4409.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 4393.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 4375.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 4296.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 4268.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 4246.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 4226.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 4204.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 4204.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 4127.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 4104.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 4093.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 4077.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 4038.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 4034.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 4029.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 4025.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 4023.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 4021.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 4009.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 3984.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 3974.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 3925.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 3925.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 3862.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 3809.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 3798.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 3769.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 3615.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 3586.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 3579.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 3574.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 3565.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 3547.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 3537.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 3497.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 3458.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 3442.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 3440.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 3434.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 3406.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 3403.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 3397.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 3395.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 3394.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 3394.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 3377.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 3373.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 3360.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 3359.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 3348.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 3266.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 3249.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 3212.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 3197.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 3180.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 3166.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 3165.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 3154.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 3151.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 3151.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 3093.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 3069.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 3062.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 3029.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 2995.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 2992.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 2984.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 2922.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 2911.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 2909.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 2905.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 2898.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 2876.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 2874.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 2871.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 2829.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 2808.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 2776.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 2746.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 2744.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 2726.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 2711.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 2693.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 2668.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 2667.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 2664.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 2649.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 2637.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 2627.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 2622.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 2619.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 2612.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 2590.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 2565.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 2556.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2552.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 2520.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 2503.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 2492.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2487.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 2481.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 2475.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 2474.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 2472.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 2465.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 2456.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 2429.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 2428.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 2401.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 2392.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 2385.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 2384.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 2384.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 2380.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 2376.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 2347.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 2340.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 2314.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 2300.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 2291.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 2290.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 2284.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 2275.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 2262.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 2257.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 2245.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 2239.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 2230.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 2220.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 2220.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 2198.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 2187.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 2180.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 2168.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 2159.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 2158.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 2140.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 2132.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2126.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 2119.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2103.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 2082.4
GTEX-1192X-2526-SM-59868 50-59 years, male 2072.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 2017.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1990.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1966.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1892.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1832.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1784.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1746.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1718.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1690.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1687.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1686.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1676.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1628.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 1602.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1586.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1451.6
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 85.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 85.4
FF:10024-101D6 15,40,85 years, mixed 85.4

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