BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:6.6 nTPM
HPA:6.6 nTPM
GTEx:11.0 nTPM
FANTOM5:37.9 Scaled Tags Per Million
Mouse:13.5 nTPM
Allen mouse:0.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 6.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.9
2290 Female, age 72, unknown 7.3
1854 Male, age 80, left hemisphere 6.8
2289 Male, age 61, right hemisphere 6.6
2846 Female, age 79, unknown 6.5
1857 Female, age 85, left hemisphere 6.4
2481 Female, age 94, left hemisphere 5.3
1781 Male, age 74, unknown 4.9
2288 Male, age 75, left hemisphere 3.5
Claustrum
nTPM: 5.4
2491 Male, age 75, both hemispheres 7.0
2568 Male, age 61, both hemispheres 6.5
2198 Male, age 80, both hemispheres 6.4
2645 Female, age 72, unknown 6.4
2196 Female, age 79, unknown 5.4
2392 Female, age 94, both hemispheres 5.4
1956 Male, age 74, unknown 4.6
2292 Female, age 85, both hemispheres 3.8
2284 Female, age 91, both hemispheres 3.3
Globus pallidus, externus
nTPM: 5.3
2646 Male, age 61, right hemisphere 7.7
2772 Female, age 79, unknown 5.6
2395 Male, age 75, both hemispheres 5.4
1996 Male, age 80, right hemisphere 4.7
2567 Female, age 72, unknown 3.4
Globus pallidus, internus
nTPM: 4.8
2778 Female, age 91, both hemispheres 6.0
2111 Female, age 85, right hemisphere 5.8
2483 Female, age 94, right hemisphere 5.8
2037 Male, age 80, right hemisphere 4.5
1818 Male, age 74, unknown 4.1
2287 Male, age 75, right hemisphere 3.8
2566 Female, age 72, unknown 3.2
Nucleus accumbens
nTPM: 6.6
2391 Female, age 94, left hemisphere 7.7
2824 Male, age 61, right hemisphere 7.2
2698 Female, age 72, unknown 6.8
1806 Female, age 85, left hemisphere 6.7
1783 Male, age 74, unknown 6.2
2286 Male, age 75, left hemisphere 6.2
2732 Male, age 80, right hemisphere 6.0
1856 Female, age 91, right hemisphere 5.6
Nucleus basalis of Meynert
nTPM: 6.0
2821 Male, age 75, both hemispheres 6.9
2393 Male, age 80, right hemisphere 6.5
2569 Male, age 61, both hemispheres 5.6
2484 Female, age 94, left hemisphere 5.0
Nucleus of the diagonal band
nTPM: 6.3
2029 Male, age 61, right hemisphere 8.5
1812 Female, age 91, both hemispheres 6.3
2775 Male, age 80, right hemisphere 6.2
2195 Female, age 85, both hemispheres 5.3
1979 Male, age 74, unknown 5.0
Olfactory tubercle
nTPM: 5.2
1846 Male, age 80, right hemisphere 6.5
1998 Female, age 91, both hemispheres 6.2
2487 Female, age 94, left hemisphere 4.4
2856 Male, age 75, right hemisphere 3.6
Putamen
nTPM: 5.7
1829 Male, age 74, unknown 6.9
2466 Female, age 79, unknown 6.2
1937 Female, age 91, right hemisphere 5.9
2489 Female, age 72, unknown 5.9
2647 Male, age 75, left hemisphere 5.5
1838 Male, age 80, right hemisphere 5.0
2482 Female, age 94, left hemisphere 4.7
Septal nuclei
nTPM: 5.6
2031 Female, age 72, unknown 8.6
2009 Female, age 91, both hemispheres 6.7
1960 Male, age 74, unknown 5.8
2629 Female, age 94, right hemisphere 5.7
2394 Male, age 61, left hemisphere 4.6
2199 Male, age 80, right hemisphere 4.4
2059 Female, age 85, both hemispheres 3.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 11.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.3
Samples: 246

Max nTPM: 20.0
Min nTPM: 3.7
Std nTPM: 2.8
Median nTPM: 9.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 20.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 19.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 18.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 18.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 18.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 18.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 16.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 16.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 16.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 16.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 16.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 11.0
Samples: 246

Max nTPM: 27.2
Min nTPM: 2.8
Std nTPM: 3.3
Median nTPM: 10.9
GTEX-1GMR8-0011-R6b-SM-CE6RC 50-59 years, female 27.2
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 21.7
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 17.9
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 17.9
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 17.8
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 17.5
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 17.4
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 17.1
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 17.0
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 16.8
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 16.8
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Brain - Putamen (basal ganglia)
Average nTPM: 9.3
Samples: 205

Max nTPM: 16.6
Min nTPM: 3.3
Std nTPM: 2.5
Median nTPM: 9.0
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 16.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 15.9
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 15.6
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 15.4
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 15.2
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 14.8
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 14.8
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 14.7
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 14.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 14.3
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 14.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 37.9
FF:10164-103B2 76 years, female 37.9
Globus pallidus
Scaled Tags Per Million: 37.6
FF:10175-103C4 60 years, female 43.4
FF:10161-103A8 76 years, female 31.8
Nucleus accumbens
Scaled Tags Per Million: 34.7
FF:10037-101F1 23-56 years, mixed 34.7
Putamen
Scaled Tags Per Million: 35.2
FF:10176-103C5 60 years, female 35.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 13.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 12.6
Samples: 4

Max nTPM: 14.6
Min nTPM: 11.1
Sample A Male 11.1
Sample B Male 14.6
Sample C Female 13.1
Sample D Female 11.4
Septum
nTPM: 11.7
Samples: 4

Max nTPM: 13.6
Min nTPM: 10.4
Sample A Male 11.0
Sample B Male 11.6
Sample C Female 13.6
Sample D Female 10.4
Ventral forebrain
nTPM: 13.5
Samples: 4

Max nTPM: 13.9
Min nTPM: 13.1
Sample A Male 13.1
Sample B Male 13.7
Sample C Female 13.4
Sample D Female 13.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
1458 Antisense, RP_040428_01_B03, Mouse strain C57BL/6J (56 days, male) 0.3
100142531 Antisense, RP_110421_01_C07, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.3
1458 Antisense, RP_040428_01_B03, Mouse strain C57BL/6J (56 days, male) 0.4
100142531 Antisense, RP_110421_01_C07, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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