MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1.3 nTPM
HPA:1.3 nTPM
GTEx:1.0 nTPM
FANTOM5:10.9 Scaled Tags Per Million
Pig:11.0 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1.1
1870 Female, age 42, unknown 1.4
2219 Male, age 76, both hemispheres 1.4
1830 Male, age 51, unknown 1.3
1827 Male, age 72, unknown 1.2
1833 Male, age 53, unknown 1.2
2411 Female, age 72, unknown 1.2
2666 Male, age 74, left hemisphere 1.1
2828 Female, age 72, unknown 1.1
2019 Male, age 18, unknown 0.7
2586 Male, age 75, left hemisphere 0.6
Dorsal raphe nucleus
nTPM: 0.9
2750 Male, age 76, both hemispheres 1.3
2016 Female, age 72, unknown 1.0
1828 Male, age 53, unknown 0.9
2047 Male, age 72, unknown 0.8
2298 Female, age 72, unknown 0.7
Inferior colliculus
nTPM: 1.1
1890 Male, age 53, unknown 1.1
2097 Female, age 72, unknown 1.1
1848 Female, age 42, unknown 1.0
2849 Male, age 72, unknown 1.0
Median raphe nucleus
nTPM: 1.0
2220 Male, age 76, midline 1.0
Pedunculopontine tegmental nucleus
nTPM: 1.1
2334 Male, age 80, both hemispheres 1.2
2338 Male, age 61, both hemispheres 1.2
1921 Female, age 85, both hemispheres 1.0
Periaquaductal grey, anterior
nTPM: 1.1
1947 Male, age 18, unknown 1.4
2502 Female, age 75, unknown 1.0
1795 Male, age 51, unknown 0.8
Periaquaductal grey, dorsal
nTPM: 0.9
1831 Male, age 72, unknown 0.9
1840 Male, age 53, unknown 0.9
2464 Female, age 72, unknown 0.9
2850 Male, age 76, both hemispheres 0.7
Periaquaductal grey, lateral
nTPM: 0.9
2053 Male, age 18, unknown 1.2
2140 Male, age 76, both hemispheres 0.8
2272 Male, age 74, both hemispheres 0.8
Pretectal area
nTPM: 0.9
2316 Male, age 76, right hemisphere 1.1
2667 Female, age 75, unknown 1.1
2825 Male, age 18, unknown 1.1
2224 Female, age 72, unknown 1.0
2407 Male, age 75, both hemispheres 1.0
1815 Male, age 53, unknown 0.9
1817 Female, age 42, unknown 0.9
2273 Male, age 74, both hemispheres 0.9
1816 Male, age 51, unknown 0.7
2007 Male, age 72, unknown 0.7
1944 Female, age 72, unknown 0.6
Red nucleus
nTPM: 1.3
1865 Male, age 51, unknown 1.5
2503 Female, age 72, unknown 1.5
2769 Male, age 72, unknown 1.5
1821 Female, age 72, unknown 1.4
1954 Female, age 42, unknown 1.4
1904 Male, age 53, unknown 1.3
2227 Male, age 72, unknown 1.3
2823 Male, age 76, right hemisphere 1.3
2588 Male, age 74, left hemisphere 1.2
2725 Female, age 75, unknown 1.1
2584 Male, age 75, left hemisphere 0.9
2785 Male, age 18, unknown 0.9
Substantia nigra
nTPM: 0.8
2590 Female, age 75, unknown 1.0
2241 Male, age 72, unknown 0.9
2409 Female, age 72, unknown 0.9
2583 Male, age 75, right hemisphere 0.9
2665 Male, age 74, both hemispheres 0.9
1851 Male, age 51, unknown 0.8
1889 Female, age 72, unknown 0.8
2699 Male, age 18, unknown 0.7
1941 Male, age 53, unknown 0.6
1916 Female, age 42, unknown 0.4
Superior colliculus
nTPM: 1.0
1913 Female, age 42, unknown 1.3
1839 Male, age 51, unknown 1.2
1895 Male, age 76, right hemisphere 1.1
2587 Male, age 74, left hemisphere 1.1
1995 Male, age 72, unknown 1.0
2261 Male, age 18, unknown 1.0
1796 Male, age 53, unknown 0.9
2668 Female, age 75, unknown 0.9
2087 Female, age 72, unknown 0.8
2664 Male, age 75, both hemispheres 0.6
Ventral tegmental area
nTPM: 1.0
2021 Male, age 53, unknown 1.0
2218 Male, age 76, both hemispheres 1.0
2223 Female, age 72, unknown 1.0
1915 Female, age 42, unknown 0.9
1942 Male, age 51, unknown 0.9
2410 Female, age 72, unknown 0.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.0
Samples: 139

Max nTPM: 2.3
Min nTPM: 0.4
Std nTPM: 0.3
Median nTPM: 0.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 2.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 2.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 1.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 1.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 1.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 1.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.9
FF:10158-103A5 76 years, female 10.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.0
Pig sample Sample description nTPM
Midbrain
nTPM: 10.3
Samples: 4

Max nTPM: 12.4
Min nTPM: 8.5
Sample A Female 8.5
Sample B Female 12.4
Sample C Male 9.8
Sample D Male 10.6
Periaqueductal gray
nTPM: 11.0
Samples: 3

Max nTPM: 12.5
Min nTPM: 10.0
Sample B Female 12.5
Sample C Male 10.0
Sample D Male 10.5
Substantia nigra
nTPM: 9.9
Samples: 4

Max nTPM: 10.5
Min nTPM: 9.5
Sample A Female 9.7
Sample B Female 10.5
Sample C Male 9.5
Sample D Male 9.8
Superior colliculi
nTPM: 9.8
Samples: 4

Max nTPM: 10.7
Min nTPM: 8.9
Sample A Female 8.9
Sample B Female 10.7
Sample C Male 10.2
Sample D Male 9.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.