BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:15.5 nTPM
HPA:15.5 nTPM
GTEx:15.7 nTPM
FANTOM5:10.2 Scaled Tags Per Million
Pig:5.6 nTPM
Mouse:24.0 nTPM
Allen mouse:2.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA014711Antibody HPA070816
Glial cells MediumNot detected
Neuronal cells MediumNot detected




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 15.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.6
2481 Female, age 94, left hemisphere 15.7
2290 Female, age 72, unknown 15.1
1857 Female, age 85, left hemisphere 14.0
2846 Female, age 79, unknown 13.6
1854 Male, age 80, left hemisphere 13.5
2288 Male, age 75, left hemisphere 12.7
2289 Male, age 61, right hemisphere 12.0
1781 Male, age 74, unknown 11.9
Claustrum
nTPM: 11.9
2196 Female, age 79, unknown 12.7
2645 Female, age 72, unknown 12.6
2284 Female, age 91, both hemispheres 12.5
2292 Female, age 85, both hemispheres 12.4
2392 Female, age 94, both hemispheres 12.4
2198 Male, age 80, both hemispheres 11.5
1956 Male, age 74, unknown 11.1
2491 Male, age 75, both hemispheres 11.1
2568 Male, age 61, both hemispheres 11.0
Globus pallidus, externus
nTPM: 14.8
1996 Male, age 80, right hemisphere 16.3
2646 Male, age 61, right hemisphere 16.2
2772 Female, age 79, unknown 14.3
2567 Female, age 72, unknown 14.0
2395 Male, age 75, both hemispheres 13.4
Globus pallidus, internus
nTPM: 15.1
2483 Female, age 94, right hemisphere 17.0
1818 Male, age 74, unknown 16.7
2037 Male, age 80, right hemisphere 16.1
2778 Female, age 91, both hemispheres 14.0
2287 Male, age 75, right hemisphere 13.9
2111 Female, age 85, right hemisphere 13.8
2566 Female, age 72, unknown 13.8
Nucleus accumbens
nTPM: 12.8
2732 Male, age 80, right hemisphere 13.6
1806 Female, age 85, left hemisphere 13.5
2391 Female, age 94, left hemisphere 13.2
2698 Female, age 72, unknown 13.1
1856 Female, age 91, right hemisphere 12.9
2286 Male, age 75, left hemisphere 12.7
1783 Male, age 74, unknown 12.6
2824 Male, age 61, right hemisphere 11.2
Nucleus basalis of Meynert
nTPM: 15.5
2569 Male, age 61, both hemispheres 18.4
2484 Female, age 94, left hemisphere 16.2
2821 Male, age 75, both hemispheres 14.4
2393 Male, age 80, right hemisphere 13.2
Nucleus of the diagonal band
nTPM: 11.6
1979 Male, age 74, unknown 12.3
1812 Female, age 91, both hemispheres 11.8
2195 Female, age 85, both hemispheres 11.5
2029 Male, age 61, right hemisphere 11.4
2775 Male, age 80, right hemisphere 11.0
Olfactory tubercle
nTPM: 11.5
1846 Male, age 80, right hemisphere 12.3
1998 Female, age 91, both hemispheres 11.4
2856 Male, age 75, right hemisphere 11.3
2487 Female, age 94, left hemisphere 10.9
Putamen
nTPM: 14.2
2489 Female, age 72, unknown 17.1
2466 Female, age 79, unknown 15.8
2482 Female, age 94, left hemisphere 15.3
1829 Male, age 74, unknown 13.7
2647 Male, age 75, left hemisphere 12.8
1937 Female, age 91, right hemisphere 12.2
1838 Male, age 80, right hemisphere 12.1
Septal nuclei
nTPM: 12.0
2199 Male, age 80, right hemisphere 14.3
2394 Male, age 61, left hemisphere 12.7
2009 Female, age 91, both hemispheres 12.0
2059 Female, age 85, both hemispheres 12.0
2031 Female, age 72, unknown 11.5
1960 Male, age 74, unknown 10.9
2629 Female, age 94, right hemisphere 10.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 15.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 14.8
Samples: 246

Max nTPM: 63.7
Min nTPM: 3.7
Std nTPM: 8.2
Median nTPM: 12.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 63.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 47.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 41.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 38.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 37.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 37.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 35.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 35.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 33.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 33.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 31.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 11.8
Samples: 246

Max nTPM: 75.7
Min nTPM: 2.7
Std nTPM: 8.3
Median nTPM: 9.1
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 75.7
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 41.3
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 41.1
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 38.1
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 37.3
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 36.8
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 34.7
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 31.3
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 30.5
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 29.9
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 28.9
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Brain - Putamen (basal ganglia)
Average nTPM: 15.7
Samples: 205

Max nTPM: 67.1
Min nTPM: 4.4
Std nTPM: 9.4
Median nTPM: 13.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 67.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 58.8
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 44.9
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 44.0
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 42.1
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 41.0
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 39.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 38.4
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 37.8
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 37.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 36.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 8.7
FF:10164-103B2 76 years, female 8.7
Globus pallidus
Scaled Tags Per Million: 10.2
FF:10161-103A8 76 years, female 13.3
FF:10175-103C4 60 years, female 7.1
Nucleus accumbens
Scaled Tags Per Million: 6.7
FF:10037-101F1 23-56 years, mixed 6.7
Putamen
Scaled Tags Per Million: 6.7
FF:10176-103C5 60 years, female 6.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.6
Pig sample Sample description nTPM
Caudate
nTPM: 4.8
Samples: 4

Max nTPM: 5.5
Min nTPM: 4.1
Sample A Female 4.1
Sample B Female 4.7
Sample C Male 4.8
Sample D Male 5.5
Putamen
nTPM: 5.6
Samples: 4

Max nTPM: 6.0
Min nTPM: 5.3
Sample A Female 5.5
Sample B Female 5.6
Sample C Male 5.3
Sample D Male 6.0
Septum
nTPM: 4.8
Samples: 4

Max nTPM: 5.8
Min nTPM: 4.1
Sample A Female 4.6
Sample B Female 4.7
Sample C Male 5.8
Sample D Male 4.1
Ventral pallidum
nTPM: 4.9
Samples: 4

Max nTPM: 5.2
Min nTPM: 4.1
Sample A Female 4.1
Sample B Female 5.1
Sample C Male 5.2
Sample D Male 5.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 24.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 24.0
Samples: 4

Max nTPM: 26.5
Min nTPM: 21.3
Sample A Male 22.8
Sample B Male 21.3
Sample C Female 25.4
Sample D Female 26.5
Septum
nTPM: 19.0
Samples: 4

Max nTPM: 21.0
Min nTPM: 17.7
Sample A Male 17.7
Sample B Male 21.0
Sample C Female 19.4
Sample D Female 17.9
Ventral forebrain
nTPM: 19.7
Samples: 4

Max nTPM: 20.8
Min nTPM: 18.8
Sample A Male 18.8
Sample B Male 19.5
Sample C Female 20.8
Sample D Female 19.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.4
69838242 Antisense, RP_050224_02_E09, Mouse strain C57BL/6J (56 days, male) 2.4
Pallidum
Expression energy: 2.5
69838242 Antisense, RP_050224_02_E09, Mouse strain C57BL/6J (56 days, male) 2.5

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The Human Protein Atlas

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