MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:40.0 nTPM
HPA:40.0 nTPM
GTEx:40.6 nTPM
FANTOM5:8.3 Scaled Tags Per Million
Mouse:54.5 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.1
1870 Female, age 42, unknown 40.1
2019 Male, age 18, unknown 40.1
2411 Female, age 72, unknown 39.0
2828 Female, age 72, unknown 38.5
1833 Male, age 53, unknown 38.1
1830 Male, age 51, unknown 37.8
1827 Male, age 72, unknown 37.6
2219 Male, age 76, both hemispheres 37.3
2586 Male, age 75, left hemisphere 36.3
2666 Male, age 74, left hemisphere 36.2
Dorsal raphe nucleus
nTPM: 39.5
2298 Female, age 72, unknown 41.1
2750 Male, age 76, both hemispheres 39.9
1828 Male, age 53, unknown 39.4
2016 Female, age 72, unknown 39.0
2047 Male, age 72, unknown 38.0
Inferior colliculus
nTPM: 39.0
2097 Female, age 72, unknown 41.0
1848 Female, age 42, unknown 39.2
1890 Male, age 53, unknown 39.1
2849 Male, age 72, unknown 36.7
Median raphe nucleus
nTPM: 39.8
2220 Male, age 76, midline 39.8
Pedunculopontine tegmental nucleus
nTPM: 40.0
2338 Male, age 61, both hemispheres 41.1
2334 Male, age 80, both hemispheres 39.9
1921 Female, age 85, both hemispheres 39.2
Periaquaductal grey, anterior
nTPM: 38.9
1795 Male, age 51, unknown 39.7
2502 Female, age 75, unknown 39.0
1947 Male, age 18, unknown 37.9
Periaquaductal grey, dorsal
nTPM: 39.0
2850 Male, age 76, both hemispheres 39.6
2464 Female, age 72, unknown 39.2
1831 Male, age 72, unknown 39.1
1840 Male, age 53, unknown 38.1
Periaquaductal grey, lateral
nTPM: 39.1
2272 Male, age 74, both hemispheres 40.7
2053 Male, age 18, unknown 38.8
2140 Male, age 76, both hemispheres 37.9
Pretectal area
nTPM: 39.9
1816 Male, age 51, unknown 41.5
1944 Female, age 72, unknown 41.4
2273 Male, age 74, both hemispheres 40.7
2667 Female, age 75, unknown 40.6
1817 Female, age 42, unknown 40.5
2224 Female, age 72, unknown 40.5
1815 Male, age 53, unknown 40.0
2007 Male, age 72, unknown 39.8
2316 Male, age 76, right hemisphere 39.3
2825 Male, age 18, unknown 37.6
2407 Male, age 75, both hemispheres 36.9
Red nucleus
nTPM: 39.3
1954 Female, age 42, unknown 42.0
1821 Female, age 72, unknown 41.4
1904 Male, age 53, unknown 40.8
1865 Male, age 51, unknown 39.9
2823 Male, age 76, right hemisphere 39.6
2785 Male, age 18, unknown 39.5
2227 Male, age 72, unknown 39.2
2769 Male, age 72, unknown 39.2
2503 Female, age 72, unknown 39.1
2725 Female, age 75, unknown 38.8
2588 Male, age 74, left hemisphere 36.1
2584 Male, age 75, left hemisphere 35.6
Substantia nigra
nTPM: 39.4
2241 Male, age 72, unknown 42.6
1889 Female, age 72, unknown 40.7
1916 Female, age 42, unknown 40.5
2409 Female, age 72, unknown 40.0
1851 Male, age 51, unknown 39.8
2699 Male, age 18, unknown 39.0
1941 Male, age 53, unknown 38.6
2665 Male, age 74, both hemispheres 38.6
2590 Female, age 75, unknown 38.0
2583 Male, age 75, right hemisphere 36.6
Superior colliculus
nTPM: 39.1
1995 Male, age 72, unknown 40.5
1913 Female, age 42, unknown 40.4
2261 Male, age 18, unknown 40.4
2087 Female, age 72, unknown 40.0
2668 Female, age 75, unknown 39.8
2587 Male, age 74, left hemisphere 39.4
1796 Male, age 53, unknown 39.1
1839 Male, age 51, unknown 37.6
2664 Male, age 75, both hemispheres 37.1
1895 Male, age 76, right hemisphere 37.0
Ventral tegmental area
nTPM: 39.9
2410 Female, age 72, unknown 41.7
2223 Female, age 72, unknown 41.1
1915 Female, age 42, unknown 39.6
2218 Male, age 76, both hemispheres 39.6
2021 Male, age 53, unknown 39.1
1942 Male, age 51, unknown 38.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.6
Samples: 139

Max nTPM: 79.4
Min nTPM: 21.4
Std nTPM: 9.9
Median nTPM: 39.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 79.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 73.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 70.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 69.7
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 61.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 59.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 57.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 57.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 57.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 55.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 55.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.3
FF:10158-103A5 76 years, female 8.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 54.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.5
Samples: 4

Max nTPM: 56.6
Min nTPM: 52.7
Sample A Male 53.8
Sample B Male 52.7
Sample C Female 55.0
Sample D Female 56.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
69202782 Antisense, RP_050324_04_D04, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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