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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:202.4 nTPM
HPA:202.4 nTPM
GTEx:302.4 nTPM
FANTOM5:91.9 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 202.4
Sample id Sample description nTPM
Amygdala
nTPM: 202.4
2814 Male, age 76, right hemisphere 216.7
2695 Female, age 67, right hemisphere 206.1
2514 Male, age 75, right hemisphere 203.1
2517 Female, age 94, left hemisphere 193.2
1987 Female, age 91, left hemisphere 193.0
Basal amygdala
nTPM: 194.8
2609 Male, age 75, right hemisphere 204.1
2685 Female, age 94, left hemisphere 197.0
2827 Female, age 67, right hemisphere 195.3
1955 Male, age 76, both hemispheres 193.0
2110 Male, age 80, left hemisphere 192.0
2243 Female, age 91, right hemisphere 187.3
Central amygdala
nTPM: 199.1
2826 Female, age 94, left hemisphere 214.0
1905 Male, age 76, both hemispheres 210.7
2515 Male, age 75, right hemisphere 193.6
2239 Male, age 80, left hemisphere 189.5
2701 Female, age 91, right hemisphere 187.9
Corticomedial amygdala
nTPM: 190.2
2428 Male, age 75, right hemisphere 194.6
2240 Male, age 76, both hemispheres 192.8
2829 Male, age 80, left hemisphere 190.8
2535 Female, age 67, right hemisphere 190.3
2429 Female, age 94, left hemisphere 190.0
2242 Female, age 91, right hemisphere 182.6
Lateral amygdala
nTPM: 200.5
2516 Male, age 75, right hemisphere 208.5
2534 Female, age 94, left hemisphere 208.0
2830 Female, age 67, right hemisphere 208.0
1883 Male, age 76, both hemispheres 204.8
2256 Male, age 80, left hemisphere 188.5
2255 Female, age 91, right hemisphere 185.2
Stria terminalis, bed nucleus
nTPM: 188.0
1974 Female, age 91, both hemispheres 194.0
2201 Male, age 74, unknown 186.2
2486 Female, age 94, both hemispheres 183.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 302.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 302.4
Samples: 152

Max nTPM: 1053.1
Min nTPM: 122.0
Std nTPM: 118.1
Median nTPM: 281.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1053.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 941.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 631.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 605.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 580.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 564.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 550.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 539.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 465.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 436.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 428.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 426.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 414.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 414.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 413.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 412.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 408.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 407.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 395.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 391.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 381.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 373.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 372.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 364.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 358.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 357.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 357.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 355.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 354.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 343.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 341.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 339.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 336.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 333.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 332.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 332.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 332.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 332.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 330.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 330.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 329.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 329.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 328.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 327.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 325.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 322.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 321.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 320.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 316.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 315.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 315.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 312.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 309.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 306.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 306.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 306.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 304.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 302.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 301.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 300.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 300.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 299.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 297.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 295.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 295.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 294.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 293.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 291.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 290.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 289.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 288.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 287.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 286.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 286.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 284.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 282.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 280.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 279.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 278.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 278.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 277.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 277.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 276.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 276.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 272.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 271.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 270.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 270.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 270.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 268.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 262.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 261.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 258.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 258.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 257.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 257.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 255.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 254.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 254.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 253.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 252.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 250.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 250.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 250.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 248.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 245.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 238.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 238.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 237.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 236.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 236.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 235.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 234.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 233.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 230.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 228.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 227.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 227.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 227.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 226.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 225.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 224.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 222.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 220.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 219.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 219.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 217.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 214.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 214.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 211.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 210.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 205.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 205.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 205.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 205.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 204.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 201.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 200.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 198.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 196.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 195.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 193.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 192.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 190.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 190.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 187.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 186.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 184.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 183.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 173.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 163.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 122.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 91.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 91.9
FF:10151-102I7 76 years, female 91.9

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