MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:222.7 nTPM
HPA:222.7 nTPM
GTEx:393.6 nTPM
FANTOM5:168.9 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 222.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 208.8
2411 Female, age 72, unknown 220.9
1870 Female, age 42, unknown 215.9
1833 Male, age 53, unknown 213.3
1830 Male, age 51, unknown 212.1
2019 Male, age 18, unknown 208.1
1827 Male, age 72, unknown 206.6
2586 Male, age 75, left hemisphere 205.5
2828 Female, age 72, unknown 204.1
2666 Male, age 74, left hemisphere 203.2
2219 Male, age 76, both hemispheres 198.3
Dorsal raphe nucleus
nTPM: 201.1
2750 Male, age 76, both hemispheres 220.9
1828 Male, age 53, unknown 200.6
2298 Female, age 72, unknown 199.1
2047 Male, age 72, unknown 192.7
2016 Female, age 72, unknown 192.3
Inferior colliculus
nTPM: 198.4
2097 Female, age 72, unknown 201.6
1890 Male, age 53, unknown 198.7
1848 Female, age 42, unknown 196.7
2849 Male, age 72, unknown 196.6
Median raphe nucleus
nTPM: 207.4
2220 Male, age 76, midline 207.4
Pedunculopontine tegmental nucleus
nTPM: 207.4
2334 Male, age 80, both hemispheres 214.1
1921 Female, age 85, both hemispheres 205.2
2338 Male, age 61, both hemispheres 202.9
Periaquaductal grey, anterior
nTPM: 200.8
1947 Male, age 18, unknown 205.3
2502 Female, age 75, unknown 201.6
1795 Male, age 51, unknown 195.5
Periaquaductal grey, dorsal
nTPM: 190.9
1831 Male, age 72, unknown 194.6
2464 Female, age 72, unknown 193.4
2850 Male, age 76, both hemispheres 191.0
1840 Male, age 53, unknown 184.4
Periaquaductal grey, lateral
nTPM: 190.5
2053 Male, age 18, unknown 194.1
2272 Male, age 74, both hemispheres 190.6
2140 Male, age 76, both hemispheres 186.7
Pretectal area
nTPM: 201.7
1817 Female, age 42, unknown 211.3
1815 Male, age 53, unknown 210.7
2007 Male, age 72, unknown 207.6
1816 Male, age 51, unknown 203.2
2825 Male, age 18, unknown 203.1
2316 Male, age 76, right hemisphere 201.4
2667 Female, age 75, unknown 200.8
1944 Female, age 72, unknown 198.1
2407 Male, age 75, both hemispheres 196.0
2224 Female, age 72, unknown 195.5
2273 Male, age 74, both hemispheres 191.0
Red nucleus
nTPM: 222.7
1821 Female, age 72, unknown 234.5
1865 Male, age 51, unknown 233.9
1904 Male, age 53, unknown 231.2
2503 Female, age 72, unknown 229.7
2227 Male, age 72, unknown 223.8
2769 Male, age 72, unknown 223.1
2588 Male, age 74, left hemisphere 220.7
2725 Female, age 75, unknown 218.3
2823 Male, age 76, right hemisphere 218.1
1954 Female, age 42, unknown 218.0
2785 Male, age 18, unknown 216.1
2584 Male, age 75, left hemisphere 205.4
Substantia nigra
nTPM: 204.6
1851 Male, age 51, unknown 212.8
1889 Female, age 72, unknown 211.5
2583 Male, age 75, right hemisphere 211.3
1916 Female, age 42, unknown 207.1
2665 Male, age 74, both hemispheres 204.7
2409 Female, age 72, unknown 202.2
2699 Male, age 18, unknown 201.2
2590 Female, age 75, unknown 199.4
1941 Male, age 53, unknown 198.2
2241 Male, age 72, unknown 197.2
Superior colliculus
nTPM: 206.0
1913 Female, age 42, unknown 218.8
2587 Male, age 74, left hemisphere 216.1
2668 Female, age 75, unknown 213.7
1995 Male, age 72, unknown 212.8
1796 Male, age 53, unknown 206.3
1895 Male, age 76, right hemisphere 205.6
2261 Male, age 18, unknown 201.8
1839 Male, age 51, unknown 200.1
2087 Female, age 72, unknown 195.8
2664 Male, age 75, both hemispheres 189.3
Ventral tegmental area
nTPM: 209.9
2223 Female, age 72, unknown 219.7
2410 Female, age 72, unknown 219.0
1915 Female, age 42, unknown 209.0
2218 Male, age 76, both hemispheres 208.9
2021 Male, age 53, unknown 203.3
1942 Male, age 51, unknown 199.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 393.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 393.6
Samples: 139

Max nTPM: 1016.9
Min nTPM: 182.2
Std nTPM: 123.7
Median nTPM: 374.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1016.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 912.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 741.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 727.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 700.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 635.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 625.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 623.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 602.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 590.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 586.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 168.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 168.9
FF:10158-103A5 76 years, female 168.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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