BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:3.9 nTPM
HPA:3.9 nTPM
GTEx:16.6 nTPM

CAUDATE - Antibody stainingi
Antibody HPA053611
Glial cells Medium
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.6
1781 Male, age 74, unknown 3.4
1854 Male, age 80, left hemisphere 3.0
2289 Male, age 61, right hemisphere 2.9
2481 Female, age 94, left hemisphere 2.6
2290 Female, age 72, unknown 2.4
2846 Female, age 79, unknown 2.4
2288 Male, age 75, left hemisphere 2.3
1857 Female, age 85, left hemisphere 1.6
Claustrum
nTPM: 3.7
2568 Male, age 61, both hemispheres 5.0
2645 Female, age 72, unknown 4.4
2491 Male, age 75, both hemispheres 4.1
2284 Female, age 91, both hemispheres 4.0
2198 Male, age 80, both hemispheres 3.6
2392 Female, age 94, both hemispheres 3.5
1956 Male, age 74, unknown 3.2
2292 Female, age 85, both hemispheres 2.7
2196 Female, age 79, unknown 2.6
Globus pallidus, externus
nTPM: 3.1
2567 Female, age 72, unknown 3.9
2646 Male, age 61, right hemisphere 3.9
2772 Female, age 79, unknown 2.7
1996 Male, age 80, right hemisphere 2.6
2395 Male, age 75, both hemispheres 2.6
Globus pallidus, internus
nTPM: 2.6
2566 Female, age 72, unknown 3.2
2037 Male, age 80, right hemisphere 3.1
2778 Female, age 91, both hemispheres 2.9
1818 Male, age 74, unknown 2.8
2483 Female, age 94, right hemisphere 2.6
2287 Male, age 75, right hemisphere 2.3
2111 Female, age 85, right hemisphere 1.6
Nucleus accumbens
nTPM: 2.6
2732 Male, age 80, right hemisphere 3.1
2391 Female, age 94, left hemisphere 2.9
2824 Male, age 61, right hemisphere 2.8
1856 Female, age 91, right hemisphere 2.7
1783 Male, age 74, unknown 2.6
2286 Male, age 75, left hemisphere 2.6
2698 Female, age 72, unknown 2.5
1806 Female, age 85, left hemisphere 1.8
Nucleus basalis of Meynert
nTPM: 2.9
2393 Male, age 80, right hemisphere 3.2
2569 Male, age 61, both hemispheres 3.2
2821 Male, age 75, both hemispheres 2.9
2484 Female, age 94, left hemisphere 2.5
Nucleus of the diagonal band
nTPM: 3.4
2029 Male, age 61, right hemisphere 4.6
2195 Female, age 85, both hemispheres 3.5
1979 Male, age 74, unknown 3.0
2775 Male, age 80, right hemisphere 3.0
1812 Female, age 91, both hemispheres 2.8
Olfactory tubercle
nTPM: 3.9
1998 Female, age 91, both hemispheres 4.8
2487 Female, age 94, left hemisphere 4.4
2856 Male, age 75, right hemisphere 3.5
1846 Male, age 80, right hemisphere 3.0
Putamen
nTPM: 2.7
1838 Male, age 80, right hemisphere 3.0
2466 Female, age 79, unknown 3.0
2647 Male, age 75, left hemisphere 3.0
1829 Male, age 74, unknown 2.7
2489 Female, age 72, unknown 2.6
1937 Female, age 91, right hemisphere 2.4
2482 Female, age 94, left hemisphere 2.2
Septal nuclei
nTPM: 3.2
2059 Female, age 85, both hemispheres 3.9
2009 Female, age 91, both hemispheres 3.5
2031 Female, age 72, unknown 3.3
1960 Male, age 74, unknown 3.1
2394 Male, age 61, left hemisphere 3.0
2199 Male, age 80, right hemisphere 2.9
2629 Female, age 94, right hemisphere 2.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 16.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 15.9
Samples: 246

Max nTPM: 155.7
Min nTPM: 0.0
Std nTPM: 27.9
Median nTPM: 1.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 155.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 131.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 126.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 103.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 103.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 94.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 86.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 81.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 80.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 79.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 75.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.6
Samples: 246

Max nTPM: 298.9
Min nTPM: 0.0
Std nTPM: 31.3
Median nTPM: 1.5
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 298.9
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 121.2
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 115.3
GTEX-Y8DK-0011-R6A-SM-4V6EG 60-69 years, male 104.2
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 98.4
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 96.9
GTEX-14ASI-0011-R6a-SM-5S2UZ 60-69 years, male 93.7
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 86.7
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 86.0
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 84.3
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 82.2
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Brain - Putamen (basal ganglia)
Average nTPM: 16.6
Samples: 205

Max nTPM: 146.8
Min nTPM: 0.0
Std nTPM: 27.5
Median nTPM: 1.6
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 146.8
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 110.0
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 102.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 92.6
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 92.3
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 91.9
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 83.2
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 80.2
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 75.7
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 75.5
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 75.2
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The Human Protein Atlas

The Human Protein Atlas project is funded
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