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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:6.5 nTPM
GTEx:15.4 nTPM
FANTOM5:49.3 Scaled Tags Per Million
Pig:3.8 nTPM

PUTAMEN - Annotated protein expression
Pending normal tissue analysis

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 6.5
Sample id Sample description nTPM
Putamen
nTPM: 6.5
1838 Male, age 80, right hemisphere 7.1
2482 Female, age 94, left hemisphere 6.9
2489 Female, age 72, unknown 6.8
2466 Female, age 79, unknown 6.7
1937 Female, age 91, right hemisphere 6.5
1829 Male, age 74, unknown 5.9
2647 Male, age 75, left hemisphere 5.8

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 15.4
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 15.4
Samples: 205

Max nTPM: 51.0
Min nTPM: 5.1
Std nTPM: 6.5
Median nTPM: 14.9
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 51.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 37.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 35.2
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 32.8
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 30.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 28.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 28.0
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 27.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 27.7
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 27.5
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 26.7
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 26.5
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 26.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 25.6
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 25.3
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 25.0
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 24.2
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 24.0
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 23.7
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 23.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 23.6
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 23.5
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 23.1
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 22.8
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 22.6
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 22.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 22.3
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 22.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 22.0
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 22.0
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 21.7
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 21.5
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 21.0
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 20.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 20.8
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 20.7
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 20.5
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 20.0
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 19.8
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 19.7
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 19.7
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 19.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 19.7
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 19.6
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 19.6
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 19.4
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 19.3
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 19.3
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 19.3
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 19.2
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 19.2
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 19.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 18.9
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 18.9
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 18.8
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 18.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 18.6
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 18.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 18.5
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 18.5
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 18.4
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 18.3
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 18.2
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 18.2
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 18.1
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 17.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 17.8
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 17.7
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 17.7
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 17.3
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 17.3
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 17.2
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 17.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 16.9
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 16.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 16.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 16.8
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 16.8
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 16.7
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 16.6
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 16.5
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 16.3
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 16.3
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 16.2
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 16.2
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 16.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 16.2
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 16.0
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 16.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 15.9
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 15.9
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 15.9
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 15.8
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 15.7
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 15.5
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 15.4
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 15.4
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 15.3
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 15.3
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 15.1
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 15.1
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 15.0
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 14.9
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 14.9
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 14.8
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 14.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 14.5
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 14.4
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 14.2
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 14.0
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 14.0
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 14.0
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 14.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 13.7
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 13.7
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 13.7
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 13.5
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 13.4
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 13.4
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 13.4
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 13.3
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 13.3
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 13.3
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 13.3
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 13.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 13.2
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 13.1
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 12.9
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 12.6
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 12.5
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 12.4
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 12.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 12.3
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 12.1
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 12.0
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 11.9
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 11.8
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 11.6
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 11.6
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 11.3
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 11.2
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 11.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 11.1
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 11.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 10.8
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 10.8
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 10.8
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 10.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 10.6
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 10.5
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 10.5
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 10.4
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 10.3
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 10.3
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 10.3
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 10.3
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 10.3
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 10.3
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 10.0
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 10.0
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 9.9
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 9.9
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 9.9
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 9.7
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 9.6
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 9.3
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 9.2
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 9.1
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 9.1
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 9.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 9.1
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 9.1
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 9.1
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 8.9
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 8.9
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 8.7
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 8.7
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 8.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 8.5
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 8.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 8.2
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 8.2
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 8.1
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 8.0
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 7.8
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 7.8
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 7.7
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 7.7
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 7.4
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 7.3
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 7.1
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 7.1
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 7.1
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 7.0
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 6.9
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 6.9
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 6.9
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 6.4
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 6.2
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 6.1
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 6.1
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 6.0
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 5.7
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 5.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 5.1
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 49.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 49.3
FF:10176-103C5 60 years, female 49.3

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3.8
Pig sample Sample description nTPM
Putamen
nTPM: 3.8
Samples: 4

Max nTPM: 4.3
Min nTPM: 3.3
Sample A Female 4.0
Sample B Female 3.3
Sample C Male 3.4
Sample D Male 4.3

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