MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:29.8 nTPM
HPA:29.8 nTPM
GTEx:43.4 nTPM
FANTOM5:294.7 Scaled Tags Per Million
Pig:78.9 nTPM
Mouse:149.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.2
1870 Female, age 42, unknown 31.8
2019 Male, age 18, unknown 28.1
1827 Male, age 72, unknown 27.3
2411 Female, age 72, unknown 26.1
1833 Male, age 53, unknown 25.5
2828 Female, age 72, unknown 25.3
1830 Male, age 51, unknown 24.1
2666 Male, age 74, left hemisphere 23.2
2586 Male, age 75, left hemisphere 20.6
2219 Male, age 76, both hemispheres 20.0
Dorsal raphe nucleus
nTPM: 28.5
2298 Female, age 72, unknown 30.7
1828 Male, age 53, unknown 28.6
2047 Male, age 72, unknown 28.2
2016 Female, age 72, unknown 27.9
2750 Male, age 76, both hemispheres 27.3
Inferior colliculus
nTPM: 28.1
2097 Female, age 72, unknown 31.9
1848 Female, age 42, unknown 28.7
2849 Male, age 72, unknown 26.3
1890 Male, age 53, unknown 25.5
Median raphe nucleus
nTPM: 27.2
2220 Male, age 76, midline 27.2
Pedunculopontine tegmental nucleus
nTPM: 27.7
2334 Male, age 80, both hemispheres 29.7
1921 Female, age 85, both hemispheres 27.0
2338 Male, age 61, both hemispheres 26.4
Periaquaductal grey, anterior
nTPM: 26.3
1947 Male, age 18, unknown 29.6
1795 Male, age 51, unknown 25.1
2502 Female, age 75, unknown 24.2
Periaquaductal grey, dorsal
nTPM: 27.5
2850 Male, age 76, both hemispheres 34.0
1840 Male, age 53, unknown 26.9
1831 Male, age 72, unknown 25.1
2464 Female, age 72, unknown 24.1
Periaquaductal grey, lateral
nTPM: 27.1
2140 Male, age 76, both hemispheres 33.0
2053 Male, age 18, unknown 25.1
2272 Male, age 74, both hemispheres 23.2
Pretectal area
nTPM: 29.8
1817 Female, age 42, unknown 33.2
1816 Male, age 51, unknown 32.9
2316 Male, age 76, right hemisphere 32.5
2007 Male, age 72, unknown 32.4
2667 Female, age 75, unknown 32.0
1815 Male, age 53, unknown 30.7
2273 Male, age 74, both hemispheres 27.8
1944 Female, age 72, unknown 27.6
2224 Female, age 72, unknown 27.5
2825 Male, age 18, unknown 25.8
2407 Male, age 75, both hemispheres 25.3
Red nucleus
nTPM: 28.5
1821 Female, age 72, unknown 37.2
2725 Female, age 75, unknown 31.4
2823 Male, age 76, right hemisphere 31.4
1954 Female, age 42, unknown 30.9
2503 Female, age 72, unknown 29.5
1865 Male, age 51, unknown 28.7
2785 Male, age 18, unknown 27.9
1904 Male, age 53, unknown 27.5
2769 Male, age 72, unknown 27.2
2588 Male, age 74, left hemisphere 26.7
2227 Male, age 72, unknown 26.5
2584 Male, age 75, left hemisphere 17.1
Substantia nigra
nTPM: 28.9
2241 Male, age 72, unknown 31.8
1916 Female, age 42, unknown 31.6
1851 Male, age 51, unknown 30.3
1889 Female, age 72, unknown 30.1
1941 Male, age 53, unknown 28.6
2409 Female, age 72, unknown 28.6
2590 Female, age 75, unknown 28.1
2699 Male, age 18, unknown 27.1
2583 Male, age 75, right hemisphere 26.8
2665 Male, age 74, both hemispheres 26.4
Superior colliculus
nTPM: 26.7
1895 Male, age 76, right hemisphere 29.5
2587 Male, age 74, left hemisphere 29.2
1913 Female, age 42, unknown 28.4
1796 Male, age 53, unknown 28.3
2261 Male, age 18, unknown 27.5
2087 Female, age 72, unknown 27.2
1839 Male, age 51, unknown 26.9
1995 Male, age 72, unknown 25.8
2668 Female, age 75, unknown 24.5
2664 Male, age 75, both hemispheres 19.2
Ventral tegmental area
nTPM: 27.6
1915 Female, age 42, unknown 29.9
2218 Male, age 76, both hemispheres 29.6
2021 Male, age 53, unknown 28.2
2410 Female, age 72, unknown 27.4
2223 Female, age 72, unknown 25.8
1942 Male, age 51, unknown 24.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.4
Samples: 139

Max nTPM: 75.1
Min nTPM: 24.2
Std nTPM: 10.4
Median nTPM: 41.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 75.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 73.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 69.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 69.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 66.2
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 65.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 64.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 64.1
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 63.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 63.2
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 62.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 294.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 294.7
FF:10158-103A5 76 years, female 294.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 78.9
Pig sample Sample description nTPM
Midbrain
nTPM: 78.9
Samples: 4

Max nTPM: 102.6
Min nTPM: 64.0
Sample A Female 102.6
Sample B Female 78.7
Sample C Male 70.3
Sample D Male 64.0
Periaqueductal gray
nTPM: 67.5
Samples: 3

Max nTPM: 77.5
Min nTPM: 57.8
Sample B Female 77.5
Sample C Male 67.3
Sample D Male 57.8
Substantia nigra
nTPM: 73.3
Samples: 4

Max nTPM: 91.2
Min nTPM: 54.8
Sample A Female 91.2
Sample B Female 80.3
Sample C Male 66.7
Sample D Male 54.8
Superior colliculi
nTPM: 75.3
Samples: 4

Max nTPM: 87.3
Min nTPM: 63.0
Sample A Female 87.3
Sample B Female 80.3
Sample C Male 70.7
Sample D Male 63.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 149.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 149.4
Samples: 4

Max nTPM: 183.8
Min nTPM: 112.1
Sample A Male 112.1
Sample B Male 132.0
Sample C Female 183.8
Sample D Female 169.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70918856 Antisense, RP_050712_04_F08, Mouse strain C57BL/6J (56 days, male) 0.1
337 Antisense, RP_Baylor_102724, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.