BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:21.8 nTPM
HPA:21.8 nTPM
GTEx:21.7 nTPM
FANTOM5:5.7 Scaled Tags Per Million
Pig:0.6 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

CAUDATE - Antibody stainingi
Antibody HPA037381Antibody HPA039262
Glial cells Not detectedNot detected
Neuronal cells MediumNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 21.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.5
2289 Male, age 61, right hemisphere 22.2
1854 Male, age 80, left hemisphere 19.9
2290 Female, age 72, unknown 19.8
1781 Male, age 74, unknown 19.4
1857 Female, age 85, left hemisphere 19.1
2846 Female, age 79, unknown 18.8
2481 Female, age 94, left hemisphere 18.7
2288 Male, age 75, left hemisphere 17.7
Claustrum
nTPM: 21.8
2645 Female, age 72, unknown 25.4
2292 Female, age 85, both hemispheres 23.8
2568 Male, age 61, both hemispheres 22.2
2284 Female, age 91, both hemispheres 21.6
1956 Male, age 74, unknown 21.4
2491 Male, age 75, both hemispheres 21.2
2196 Female, age 79, unknown 20.2
2198 Male, age 80, both hemispheres 20.1
2392 Female, age 94, both hemispheres 19.8
Globus pallidus, externus
nTPM: 21.0
2567 Female, age 72, unknown 23.4
2646 Male, age 61, right hemisphere 22.1
2772 Female, age 79, unknown 20.8
2395 Male, age 75, both hemispheres 19.7
1996 Male, age 80, right hemisphere 18.8
Globus pallidus, internus
nTPM: 19.9
2111 Female, age 85, right hemisphere 22.6
2566 Female, age 72, unknown 21.6
1818 Male, age 74, unknown 20.2
2778 Female, age 91, both hemispheres 19.9
2037 Male, age 80, right hemisphere 19.2
2483 Female, age 94, right hemisphere 18.6
2287 Male, age 75, right hemisphere 17.3
Nucleus accumbens
nTPM: 19.8
2732 Male, age 80, right hemisphere 21.4
1806 Female, age 85, left hemisphere 21.3
2824 Male, age 61, right hemisphere 20.9
1783 Male, age 74, unknown 20.7
1856 Female, age 91, right hemisphere 19.7
2391 Female, age 94, left hemisphere 19.0
2698 Female, age 72, unknown 18.5
2286 Male, age 75, left hemisphere 17.2
Nucleus basalis of Meynert
nTPM: 20.5
2569 Male, age 61, both hemispheres 21.8
2821 Male, age 75, both hemispheres 20.5
2484 Female, age 94, left hemisphere 19.9
2393 Male, age 80, right hemisphere 19.6
Nucleus of the diagonal band
nTPM: 19.2
2195 Female, age 85, both hemispheres 20.1
1979 Male, age 74, unknown 19.3
2029 Male, age 61, right hemisphere 19.1
2775 Male, age 80, right hemisphere 19.1
1812 Female, age 91, both hemispheres 18.4
Olfactory tubercle
nTPM: 19.6
1998 Female, age 91, both hemispheres 20.8
2856 Male, age 75, right hemisphere 19.8
1846 Male, age 80, right hemisphere 19.0
2487 Female, age 94, left hemisphere 19.0
Putamen
nTPM: 19.9
2489 Female, age 72, unknown 21.3
2466 Female, age 79, unknown 20.4
2647 Male, age 75, left hemisphere 20.1
1838 Male, age 80, right hemisphere 19.6
1937 Female, age 91, right hemisphere 19.5
1829 Male, age 74, unknown 19.1
2482 Female, age 94, left hemisphere 19.0
Septal nuclei
nTPM: 20.3
2059 Female, age 85, both hemispheres 22.4
2394 Male, age 61, left hemisphere 21.2
2009 Female, age 91, both hemispheres 20.3
2199 Male, age 80, right hemisphere 20.2
1960 Male, age 74, unknown 20.0
2031 Female, age 72, unknown 19.2
2629 Female, age 94, right hemisphere 18.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 21.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 19.8
Samples: 246

Max nTPM: 68.0
Min nTPM: 4.0
Std nTPM: 8.2
Median nTPM: 18.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 68.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 48.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 45.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 44.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 40.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 39.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 39.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 39.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 39.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 36.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 34.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 21.7
Samples: 246

Max nTPM: 66.4
Min nTPM: 5.5
Std nTPM: 8.7
Median nTPM: 20.2
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 66.4
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 55.6
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 48.6
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 47.4
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 44.8
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 43.9
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 42.9
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 40.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 40.3
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 40.3
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 37.0
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Brain - Putamen (basal ganglia)
Average nTPM: 20.8
Samples: 205

Max nTPM: 41.3
Min nTPM: 3.9
Std nTPM: 7.4
Median nTPM: 20.3
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 41.3
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 40.8
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 40.7
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 38.3
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 37.9
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 37.2
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 36.9
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 36.4
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 34.4
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 34.1
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 34.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 5.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 3.2
FF:10164-103B2 76 years, female 3.2
Globus pallidus
Scaled Tags Per Million: 1.9
FF:10161-103A8 76 years, female 2.3
FF:10175-103C4 60 years, female 1.5
Nucleus accumbens
Scaled Tags Per Million: 5.7
FF:10037-101F1 23-56 years, mixed 5.7
Putamen
Scaled Tags Per Million: 3.7
FF:10176-103C5 60 years, female 3.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.6
Pig sample Sample description nTPM
Caudate
nTPM: 0.3
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.2
Sample A Female 0.3
Sample B Female 0.5
Sample C Male 0.3
Sample D Male 0.2
Putamen
nTPM: 0.5
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.2
Sample A Female 1.2
Sample B Female 0.2
Sample C Male 0.3
Sample D Male 0.3
Septum
nTPM: 0.6
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.3
Sample A Female 0.9
Sample B Female 0.6
Sample C Male 0.5
Sample D Male 0.3
Ventral pallidum
nTPM: 0.3
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.1
Sample A Female 0.3
Sample B Female 0.3
Sample C Male 0.6
Sample D Male 0.1

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The Human Protein Atlas

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