We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
VAMP2
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • VAMP2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
70.172
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:264.4 nTPM
HPA:264.4 nTPM
GTEx:335.6 nTPM
FANTOM5:872.8 Scaled Tags Per Million

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody CAB078785
Amygdala mean intensity 70.172
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Nucleus of the lateral olfactory tract 70.172
Basal medial amygdaloid nucleus 53.496
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 32.282
Cortical amygdala 53.086
Central amygdala 40.993
Medial amygdaloid nucleus 50.808

AMYGDALA - HPA Brain RNA-seq
Max nTPM 264.4
Sample id Sample description nTPM
Amygdala
nTPM: 182.2
2814 Male, age 76, right hemisphere 266.6
1987 Female, age 91, left hemisphere 165.4
2517 Female, age 94, left hemisphere 163.8
2695 Female, age 67, right hemisphere 163.8
2514 Male, age 75, right hemisphere 151.2
Basal amygdala
nTPM: 211.0
2685 Female, age 94, left hemisphere 258.0
2243 Female, age 91, right hemisphere 252.3
1955 Male, age 76, both hemispheres 220.4
2110 Male, age 80, left hemisphere 205.4
2827 Female, age 67, right hemisphere 177.8
2609 Male, age 75, right hemisphere 152.2
Central amygdala
nTPM: 201.9
2239 Male, age 80, left hemisphere 236.4
1905 Male, age 76, both hemispheres 223.3
2701 Female, age 91, right hemisphere 208.3
2826 Female, age 94, left hemisphere 197.7
2515 Male, age 75, right hemisphere 143.8
Corticomedial amygdala
nTPM: 208.3
2829 Male, age 80, left hemisphere 247.7
2242 Female, age 91, right hemisphere 233.5
2240 Male, age 76, both hemispheres 227.2
2429 Female, age 94, left hemisphere 211.6
2535 Female, age 67, right hemisphere 189.6
2428 Male, age 75, right hemisphere 140.4
Lateral amygdala
nTPM: 196.3
1883 Male, age 76, both hemispheres 237.6
2534 Female, age 94, left hemisphere 237.6
2255 Female, age 91, right hemisphere 206.3
2256 Male, age 80, left hemisphere 203.6
2830 Female, age 67, right hemisphere 149.7
2516 Male, age 75, right hemisphere 142.7
Stria terminalis, bed nucleus
nTPM: 264.4
2486 Female, age 94, both hemispheres 295.2
1974 Female, age 91, both hemispheres 287.0
2201 Male, age 74, unknown 211.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 335.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 335.6
Samples: 152

Max nTPM: 1079.0
Min nTPM: 105.2
Std nTPM: 147.5
Median nTPM: 312.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1079.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 859.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 821.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 787.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 664.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 624.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 564.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 564.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 559.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 554.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 546.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 541.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 540.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 531.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 524.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 513.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 513.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 512.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 510.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 486.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 482.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 480.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 463.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 462.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 454.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 453.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 452.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 446.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 437.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 435.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 435.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 432.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 428.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 428.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 419.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 413.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 402.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 401.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 399.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 398.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 398.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 391.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 390.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 386.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 381.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 381.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 378.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 377.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 376.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 375.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 373.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 373.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 372.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 366.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 365.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 364.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 361.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 361.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 351.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 351.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 350.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 339.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 336.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 335.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 331.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 329.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 327.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 327.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 326.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 323.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 318.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 317.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 316.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 315.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 314.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 312.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 311.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 307.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 301.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 299.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 298.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 289.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 284.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 283.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 279.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 275.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 275.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 273.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 272.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 271.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 266.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 265.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 265.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 263.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 260.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 260.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 258.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 257.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 257.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 250.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 250.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 250.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 247.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 246.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 243.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 243.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 241.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 240.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 239.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 238.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 238.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 237.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 235.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 235.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 232.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 231.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 229.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 227.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 227.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 227.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 224.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 223.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 219.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 218.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 218.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 213.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 208.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 207.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 207.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 207.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 203.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 199.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 193.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 192.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 189.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 188.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 184.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 182.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 182.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 181.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 179.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 177.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 168.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 168.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 167.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 165.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 162.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 152.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 147.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 133.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 109.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 105.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 872.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 872.8
FF:10151-102I7 76 years, female 872.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.