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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:139.6 nTPM
HPA:139.6 nTPM
GTEx:176.0 nTPM
FANTOM5:389.3 Scaled Tags Per Million

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 139.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 122.9
2194 Female, age 79, both hemispheres 157.0
2565 Male, age 75, midline 137.8
2816 Male, age 47, midline 125.0
1981 Female, age 72, midline 102.8
2048 Male, age 55, midline 92.0
Cervical spinal cord, dorsal horn
nTPM: 139.6
2297 Male, age 75, both hemispheres 209.4
1877 Male, age 55, unknown 140.7
2069 Male, age 47, both hemispheres 139.2
2296 Male, age 66, both hemispheres 130.5
2721 Male, age 90, both hemispheres 123.0
2173 Female, age 72, unknown 94.9
Cervical spinal cord, ventral horn
nTPM: 116.1
2820 Female, age 79, both hemispheres 142.3
2068 Male, age 55, unknown 136.4
2480 Male, age 75, both hemispheres 130.8
2295 Male, age 66, both hemispheres 119.9
2809 Male, age 90, both hemispheres 98.3
2098 Female, age 72, unknown 68.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 176.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 176.0
Samples: 159

Max nTPM: 306.2
Min nTPM: 94.4
Std nTPM: 33.9
Median nTPM: 172.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 306.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 272.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 262.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 261.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 258.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 258.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 255.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 250.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 248.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 239.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 233.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 232.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 225.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 219.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 219.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 218.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 214.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 214.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 213.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 211.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 209.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 208.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 206.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 205.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 205.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 204.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 204.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 204.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 200.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 200.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 200.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 199.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 199.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 197.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 197.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 196.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 196.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 195.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 195.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 194.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 194.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 194.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 193.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 193.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 192.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 191.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 191.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 190.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 189.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 188.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 188.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 186.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 185.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 185.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 182.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 181.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 181.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 181.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 180.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 180.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 179.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 179.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 178.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 178.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 178.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 178.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 178.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 177.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 176.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 176.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 176.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 175.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 174.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 174.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 174.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 173.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 173.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 173.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 172.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 172.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 171.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 171.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 170.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 170.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 170.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 168.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 168.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 168.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 167.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 166.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 166.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 165.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 163.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 163.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 163.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 163.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 163.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 162.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 162.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 162.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 162.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 162.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 161.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 160.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 160.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 160.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 159.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 159.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 159.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 157.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 156.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 155.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 155.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 155.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 154.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 153.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 152.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 152.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 152.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 152.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 151.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 151.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 151.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 150.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 150.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 150.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 150.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 150.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 149.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 148.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 147.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 146.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 146.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 144.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 144.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 143.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 143.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 142.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 142.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 142.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 142.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 139.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 139.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 138.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 135.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 135.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 135.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 134.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 134.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 133.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 129.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 128.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 127.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 124.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 118.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 118.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 116.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 114.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 94.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 389.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 389.3
FF:10159-103A6 76 years, female 411.5
FF:10181-103D1 60 years, female 367.2

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