MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:18.4 nTPM
HPA:18.4 nTPM
GTEx:45.0 nTPM
FANTOM5:93.6 Scaled Tags Per Million
Pig:93.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.4
2019 Male, age 18, unknown 21.1
2586 Male, age 75, left hemisphere 12.7
1827 Male, age 72, unknown 11.8
2219 Male, age 76, both hemispheres 10.7
2666 Male, age 74, left hemisphere 5.8
1870 Female, age 42, unknown 4.1
2411 Female, age 72, unknown 3.7
1833 Male, age 53, unknown 2.6
1830 Male, age 51, unknown 1.4
2828 Female, age 72, unknown 0.0
Dorsal raphe nucleus
nTPM: 0.8
2298 Female, age 72, unknown 4.2
1828 Male, age 53, unknown 0.0
2016 Female, age 72, unknown 0.0
2047 Male, age 72, unknown 0.0
2750 Male, age 76, both hemispheres 0.0
Inferior colliculus
nTPM: 12.0
2849 Male, age 72, unknown 16.8
1848 Female, age 42, unknown 14.9
2097 Female, age 72, unknown 13.5
1890 Male, age 53, unknown 2.8
Median raphe nucleus
nTPM: 0.0
2220 Male, age 76, midline 0.0
Pedunculopontine tegmental nucleus
nTPM: 5.4
2334 Male, age 80, both hemispheres 10.4
1921 Female, age 85, both hemispheres 5.8
2338 Male, age 61, both hemispheres 0.0
Periaquaductal grey, anterior
nTPM: 8.7
2502 Female, age 75, unknown 11.4
1795 Male, age 51, unknown 7.8
1947 Male, age 18, unknown 6.9
Periaquaductal grey, dorsal
nTPM: 5.6
1840 Male, age 53, unknown 16.0
2464 Female, age 72, unknown 6.5
1831 Male, age 72, unknown 0.0
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 0.5
2272 Male, age 74, both hemispheres 1.5
2053 Male, age 18, unknown 0.0
2140 Male, age 76, both hemispheres 0.0
Pretectal area
nTPM: 18.4
1816 Male, age 51, unknown 40.7
1944 Female, age 72, unknown 39.8
1817 Female, age 42, unknown 38.2
2007 Male, age 72, unknown 33.8
1815 Male, age 53, unknown 21.2
2667 Female, age 75, unknown 14.9
2407 Male, age 75, both hemispheres 5.6
2224 Female, age 72, unknown 5.3
2273 Male, age 74, both hemispheres 2.9
2825 Male, age 18, unknown 0.1
2316 Male, age 76, right hemisphere 0.0
Red nucleus
nTPM: 1.8
2785 Male, age 18, unknown 15.7
2584 Male, age 75, left hemisphere 3.4
2725 Female, age 75, unknown 2.9
1821 Female, age 72, unknown 0.0
1865 Male, age 51, unknown 0.0
1904 Male, age 53, unknown 0.0
1954 Female, age 42, unknown 0.0
2227 Male, age 72, unknown 0.0
2503 Female, age 72, unknown 0.0
2588 Male, age 74, left hemisphere 0.0
2769 Male, age 72, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 13.2
1941 Male, age 53, unknown 29.3
1889 Female, age 72, unknown 27.0
2241 Male, age 72, unknown 20.1
2665 Male, age 74, both hemispheres 14.3
2409 Female, age 72, unknown 12.6
1916 Female, age 42, unknown 9.0
2583 Male, age 75, right hemisphere 8.2
1851 Male, age 51, unknown 7.8
2590 Female, age 75, unknown 3.4
2699 Male, age 18, unknown 0.0
Superior colliculus
nTPM: 10.5
2087 Female, age 72, unknown 28.1
1895 Male, age 76, right hemisphere 17.2
2261 Male, age 18, unknown 14.4
1796 Male, age 53, unknown 12.5
1839 Male, age 51, unknown 12.0
2664 Male, age 75, both hemispheres 9.3
2668 Female, age 75, unknown 8.2
1913 Female, age 42, unknown 2.3
2587 Male, age 74, left hemisphere 1.5
1995 Male, age 72, unknown 0.0
Ventral tegmental area
nTPM: 3.1
2223 Female, age 72, unknown 9.4
2410 Female, age 72, unknown 5.2
1915 Female, age 42, unknown 3.0
2218 Male, age 76, both hemispheres 1.1
1942 Male, age 51, unknown 0.0
2021 Male, age 53, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.0
Samples: 139

Max nTPM: 177.1
Min nTPM: 17.4
Std nTPM: 21.5
Median nTPM: 40.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 177.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 141.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 121.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 89.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 89.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 88.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 84.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 80.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 76.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 70.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 67.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.6
FF:10158-103A5 76 years, female 93.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 93.1
Pig sample Sample description nTPM
Midbrain
nTPM: 89.2
Samples: 4

Max nTPM: 136.6
Min nTPM: 53.7
Sample A Female 53.7
Sample B Female 63.0
Sample C Male 136.6
Sample D Male 103.4
Periaqueductal gray
nTPM: 59.9
Samples: 3

Max nTPM: 69.0
Min nTPM: 52.8
Sample B Female 58.0
Sample C Male 69.0
Sample D Male 52.8
Substantia nigra
nTPM: 64.5
Samples: 4

Max nTPM: 89.6
Min nTPM: 38.9
Sample A Female 89.6
Sample B Female 57.1
Sample C Male 72.2
Sample D Male 38.9
Superior colliculi
nTPM: 93.1
Samples: 4

Max nTPM: 120.0
Min nTPM: 61.6
Sample A Female 105.4
Sample B Female 61.6
Sample C Male 120.0
Sample D Male 85.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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