MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:49.3 nTPM
HPA:49.3 nTPM
GTEx:38.8 nTPM
FANTOM5:339.1 Scaled Tags Per Million
Pig:15.7 nTPM
Mouse:0.1 nTPM
Allen mouse:4.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.7
2586 Male, age 75, left hemisphere 43.3
2828 Female, age 72, unknown 34.0
2411 Female, age 72, unknown 32.8
1830 Male, age 51, unknown 32.6
1833 Male, age 53, unknown 32.4
2019 Male, age 18, unknown 32.1
1870 Female, age 42, unknown 29.1
2666 Male, age 74, left hemisphere 27.4
1827 Male, age 72, unknown 24.2
2219 Male, age 76, both hemispheres 19.0
Dorsal raphe nucleus
nTPM: 35.8
2298 Female, age 72, unknown 41.3
2016 Female, age 72, unknown 39.7
2750 Male, age 76, both hemispheres 35.4
2047 Male, age 72, unknown 31.6
1828 Male, age 53, unknown 30.7
Inferior colliculus
nTPM: 30.1
1890 Male, age 53, unknown 33.4
2097 Female, age 72, unknown 31.4
1848 Female, age 42, unknown 29.0
2849 Male, age 72, unknown 26.4
Median raphe nucleus
nTPM: 39.7
2220 Male, age 76, midline 39.7
Pedunculopontine tegmental nucleus
nTPM: 33.2
2338 Male, age 61, both hemispheres 46.8
2334 Male, age 80, both hemispheres 29.6
1921 Female, age 85, both hemispheres 23.3
Periaquaductal grey, anterior
nTPM: 40.6
1795 Male, age 51, unknown 51.1
2502 Female, age 75, unknown 37.9
1947 Male, age 18, unknown 33.0
Periaquaductal grey, dorsal
nTPM: 35.9
2850 Male, age 76, both hemispheres 43.0
1831 Male, age 72, unknown 41.7
2464 Female, age 72, unknown 31.7
1840 Male, age 53, unknown 27.2
Periaquaductal grey, lateral
nTPM: 49.3
2272 Male, age 74, both hemispheres 61.4
2140 Male, age 76, both hemispheres 55.8
2053 Male, age 18, unknown 30.8
Pretectal area
nTPM: 34.8
2224 Female, age 72, unknown 52.4
2273 Male, age 74, both hemispheres 49.9
2316 Male, age 76, right hemisphere 44.6
1817 Female, age 42, unknown 35.7
2007 Male, age 72, unknown 33.4
2825 Male, age 18, unknown 30.2
2667 Female, age 75, unknown 28.9
2407 Male, age 75, both hemispheres 28.7
1944 Female, age 72, unknown 27.6
1815 Male, age 53, unknown 27.0
1816 Male, age 51, unknown 24.2
Red nucleus
nTPM: 33.4
2785 Male, age 18, unknown 41.4
2227 Male, age 72, unknown 40.0
2584 Male, age 75, left hemisphere 38.0
2769 Male, age 72, unknown 37.6
1904 Male, age 53, unknown 34.5
2503 Female, age 72, unknown 33.5
2725 Female, age 75, unknown 32.6
1865 Male, age 51, unknown 32.3
1954 Female, age 42, unknown 31.7
2588 Male, age 74, left hemisphere 28.4
1821 Female, age 72, unknown 26.8
2823 Male, age 76, right hemisphere 24.1
Substantia nigra
nTPM: 32.0
2699 Male, age 18, unknown 47.3
1851 Male, age 51, unknown 38.2
2590 Female, age 75, unknown 36.5
1916 Female, age 42, unknown 34.6
2665 Male, age 74, both hemispheres 34.0
2583 Male, age 75, right hemisphere 30.9
1889 Female, age 72, unknown 27.5
1941 Male, age 53, unknown 26.8
2241 Male, age 72, unknown 22.5
2409 Female, age 72, unknown 21.7
Superior colliculus
nTPM: 33.5
1796 Male, age 53, unknown 48.4
1995 Male, age 72, unknown 45.2
2587 Male, age 74, left hemisphere 34.9
1913 Female, age 42, unknown 34.8
2668 Female, age 75, unknown 34.0
2261 Male, age 18, unknown 32.3
1839 Male, age 51, unknown 27.8
2664 Male, age 75, both hemispheres 27.0
2087 Female, age 72, unknown 25.9
1895 Male, age 76, right hemisphere 25.2
Ventral tegmental area
nTPM: 35.7
2021 Male, age 53, unknown 41.3
1915 Female, age 42, unknown 40.7
1942 Male, age 51, unknown 34.9
2223 Female, age 72, unknown 34.7
2218 Male, age 76, both hemispheres 34.2
2410 Female, age 72, unknown 28.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.8
Samples: 139

Max nTPM: 150.8
Min nTPM: 4.6
Std nTPM: 29.4
Median nTPM: 30.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 150.8
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 128.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 125.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 124.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 122.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 115.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 96.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 92.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 92.2
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 91.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 91.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 339.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 339.1
FF:10158-103A5 76 years, female 339.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.7
Pig sample Sample description nTPM
Midbrain
nTPM: 4.5
Samples: 4

Max nTPM: 7.3
Min nTPM: 2.6
Sample A Female 7.3
Sample B Female 3.4
Sample C Male 4.6
Sample D Male 2.6
Periaqueductal gray
nTPM: 2.1
Samples: 3

Max nTPM: 2.5
Min nTPM: 1.7
Sample B Female 2.5
Sample C Male 2.2
Sample D Male 1.7
Substantia nigra
nTPM: 7.7
Samples: 4

Max nTPM: 14.8
Min nTPM: 3.0
Sample A Female 8.3
Sample B Female 14.8
Sample C Male 3.0
Sample D Male 4.8
Superior colliculi
nTPM: 15.8
Samples: 4

Max nTPM: 40.0
Min nTPM: 4.2
Sample A Female 14.1
Sample B Female 40.0
Sample C Male 4.7
Sample D Male 4.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.4
69201630 Antisense, RP_050317_03_C11, Mouse strain C57BL/6J (56 days, male) 4.8
76115722 Antisense, RP_060620_02_B01, Mouse strain C57BL/6J (56 days, male) 4.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.