We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
NPTXR
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • NPTXR
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:91.6 nTPM
HPA:91.6 nTPM
GTEx:113.4 nTPM
FANTOM5:143.8 Scaled Tags Per Million
Pig:146.0 nTPM
Mouse:462.6 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 91.6
Sample id Sample description nTPM
Amygdala
nTPM: 26.0
2517 Female, age 94, left hemisphere 66.0
1987 Female, age 91, left hemisphere 43.2
2514 Male, age 75, right hemisphere 20.7
2695 Female, age 67, right hemisphere 0.0
2814 Male, age 76, right hemisphere 0.0
Basal amygdala
nTPM: 91.6
2243 Female, age 91, right hemisphere 164.0
2685 Female, age 94, left hemisphere 146.7
2827 Female, age 67, right hemisphere 89.3
2110 Male, age 80, left hemisphere 65.6
2609 Male, age 75, right hemisphere 46.8
1955 Male, age 76, both hemispheres 37.3
Central amygdala
nTPM: 29.0
2826 Female, age 94, left hemisphere 85.4
2239 Male, age 80, left hemisphere 46.5
2515 Male, age 75, right hemisphere 13.2
1905 Male, age 76, both hemispheres 0.0
2701 Female, age 91, right hemisphere 0.0
Corticomedial amygdala
nTPM: 79.0
2242 Female, age 91, right hemisphere 157.2
2829 Male, age 80, left hemisphere 106.9
2535 Female, age 67, right hemisphere 74.7
2429 Female, age 94, left hemisphere 69.9
2428 Male, age 75, right hemisphere 34.1
2240 Male, age 76, both hemispheres 31.0
Lateral amygdala
nTPM: 41.0
2534 Female, age 94, left hemisphere 116.4
2256 Male, age 80, left hemisphere 66.5
2830 Female, age 67, right hemisphere 25.1
2255 Female, age 91, right hemisphere 24.9
2516 Male, age 75, right hemisphere 10.2
1883 Male, age 76, both hemispheres 2.8
Stria terminalis, bed nucleus
nTPM: 40.0
1974 Female, age 91, both hemispheres 64.2
2486 Female, age 94, both hemispheres 46.9
2201 Male, age 74, unknown 8.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 113.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 113.4
Samples: 152

Max nTPM: 345.6
Min nTPM: 2.7
Std nTPM: 71.0
Median nTPM: 98.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 345.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 325.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 303.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 284.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 281.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 275.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 275.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 273.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 249.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 247.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 218.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 215.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 212.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 210.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 206.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 206.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 204.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 203.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 196.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 192.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 190.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 183.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 181.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 178.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 177.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 177.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 176.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 173.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 170.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 170.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 168.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 168.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 167.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 167.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 165.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 164.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 163.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 162.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 161.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 160.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 157.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 157.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 156.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 156.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 151.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 151.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 148.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 143.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 142.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 141.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 140.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 139.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 138.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 135.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 135.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 132.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 128.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 127.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 125.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 124.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 122.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 121.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 120.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 116.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 116.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 115.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 113.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 112.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 111.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 108.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 107.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 102.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 101.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 101.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 101.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 99.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 97.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 97.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 95.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 94.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 91.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 91.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 88.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 88.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 87.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 87.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 86.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 78.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 78.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 75.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 75.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 74.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 73.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 73.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 72.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 70.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 68.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 66.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 65.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 65.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 65.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 64.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 64.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 63.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 63.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 63.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 62.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 62.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 61.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 59.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 59.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 58.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 55.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 55.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 54.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 53.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 52.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 52.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 52.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 52.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 51.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 50.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 49.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 49.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 47.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 47.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 46.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 44.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 44.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 44.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 42.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 42.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 41.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 41.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 40.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 40.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 40.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 38.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 36.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 35.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 35.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 34.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 34.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 32.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 32.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 29.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 29.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 16.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 15.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 12.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 9.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 143.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 143.8
FF:10151-102I7 76 years, female 143.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 146.0
Pig sample Sample description nTPM
Amygdala
nTPM: 146.1
Samples: 4

Max nTPM: 242.2
Min nTPM: 57.0
Sample A Female 242.2
Sample B Female 57.0
Sample C Male 155.8
Sample D Male 129.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 462.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 462.7
Samples: 4

Max nTPM: 508.1
Min nTPM: 388.8
Sample A Male 508.1
Sample B Male 474.7
Sample C Female 388.8
Sample D Female 479.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.