MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:9.7 nTPM
HPA:9.7 nTPM
GTEx:20.0 nTPM
FANTOM5:113.1 Scaled Tags Per Million
Pig:65.5 nTPM
Mouse:13.2 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 9.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.4
1870 Female, age 42, unknown 11.3
2411 Female, age 72, unknown 9.7
1833 Male, age 53, unknown 9.2
2019 Male, age 18, unknown 8.9
1830 Male, age 51, unknown 8.4
2219 Male, age 76, both hemispheres 8.0
2666 Male, age 74, left hemisphere 7.4
1827 Male, age 72, unknown 7.3
2828 Female, age 72, unknown 7.2
2586 Male, age 75, left hemisphere 6.6
Dorsal raphe nucleus
nTPM: 8.1
2750 Male, age 76, both hemispheres 10.1
1828 Male, age 53, unknown 7.7
2016 Female, age 72, unknown 7.7
2047 Male, age 72, unknown 7.7
2298 Female, age 72, unknown 7.3
Inferior colliculus
nTPM: 7.7
2097 Female, age 72, unknown 8.6
1890 Male, age 53, unknown 7.9
1848 Female, age 42, unknown 7.2
2849 Male, age 72, unknown 7.0
Median raphe nucleus
nTPM: 9.0
2220 Male, age 76, midline 9.0
Pedunculopontine tegmental nucleus
nTPM: 8.3
1921 Female, age 85, both hemispheres 8.8
2334 Male, age 80, both hemispheres 8.7
2338 Male, age 61, both hemispheres 7.5
Periaquaductal grey, anterior
nTPM: 7.7
2502 Female, age 75, unknown 8.2
1947 Male, age 18, unknown 7.8
1795 Male, age 51, unknown 7.0
Periaquaductal grey, dorsal
nTPM: 7.4
2850 Male, age 76, both hemispheres 7.8
1840 Male, age 53, unknown 7.3
2464 Female, age 72, unknown 7.3
1831 Male, age 72, unknown 7.2
Periaquaductal grey, lateral
nTPM: 7.0
2053 Male, age 18, unknown 7.5
2272 Male, age 74, both hemispheres 7.1
2140 Male, age 76, both hemispheres 6.3
Pretectal area
nTPM: 7.9
1817 Female, age 42, unknown 9.2
1815 Male, age 53, unknown 8.5
2273 Male, age 74, both hemispheres 8.5
1944 Female, age 72, unknown 8.4
2825 Male, age 18, unknown 8.4
2007 Male, age 72, unknown 7.7
2224 Female, age 72, unknown 7.7
2407 Male, age 75, both hemispheres 7.6
2316 Male, age 76, right hemisphere 7.1
2667 Female, age 75, unknown 7.0
1816 Male, age 51, unknown 6.8
Red nucleus
nTPM: 9.4
1904 Male, age 53, unknown 11.8
1821 Female, age 72, unknown 11.4
1865 Male, age 51, unknown 10.7
1954 Female, age 42, unknown 9.9
2769 Male, age 72, unknown 9.5
2823 Male, age 76, right hemisphere 9.5
2503 Female, age 72, unknown 9.4
2725 Female, age 75, unknown 9.1
2227 Male, age 72, unknown 8.3
2584 Male, age 75, left hemisphere 7.9
2588 Male, age 74, left hemisphere 7.8
2785 Male, age 18, unknown 7.6
Substantia nigra
nTPM: 9.7
2241 Male, age 72, unknown 14.2
2699 Male, age 18, unknown 11.1
2409 Female, age 72, unknown 10.7
1889 Female, age 72, unknown 9.5
2590 Female, age 75, unknown 9.5
1916 Female, age 42, unknown 9.1
1851 Male, age 51, unknown 9.0
2583 Male, age 75, right hemisphere 8.5
1941 Male, age 53, unknown 8.3
2665 Male, age 74, both hemispheres 6.9
Superior colliculus
nTPM: 8.3
1839 Male, age 51, unknown 10.2
1895 Male, age 76, right hemisphere 9.5
2668 Female, age 75, unknown 8.8
1913 Female, age 42, unknown 8.7
1995 Male, age 72, unknown 8.5
2587 Male, age 74, left hemisphere 8.0
2664 Male, age 75, both hemispheres 7.8
2087 Female, age 72, unknown 7.6
1796 Male, age 53, unknown 7.4
2261 Male, age 18, unknown 6.8
Ventral tegmental area
nTPM: 8.5
2223 Female, age 72, unknown 9.7
2410 Female, age 72, unknown 9.5
2218 Male, age 76, both hemispheres 8.6
1915 Female, age 42, unknown 8.1
1942 Male, age 51, unknown 8.1
2021 Male, age 53, unknown 7.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.0
Samples: 139

Max nTPM: 36.2
Min nTPM: 8.8
Std nTPM: 5.1
Median nTPM: 19.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 36.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 33.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 33.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 32.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 32.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 31.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 31.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 30.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 30.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 29.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 28.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 113.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 113.1
FF:10158-103A5 76 years, female 113.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 65.5
Pig sample Sample description nTPM
Midbrain
nTPM: 65.2
Samples: 4

Max nTPM: 69.9
Min nTPM: 59.3
Sample A Female 69.9
Sample B Female 69.5
Sample C Male 62.1
Sample D Male 59.3
Periaqueductal gray
nTPM: 62.6
Samples: 3

Max nTPM: 68.8
Min nTPM: 59.2
Sample B Female 68.8
Sample C Male 59.8
Sample D Male 59.2
Substantia nigra
nTPM: 65.5
Samples: 4

Max nTPM: 76.5
Min nTPM: 57.9
Sample A Female 62.1
Sample B Female 57.9
Sample C Male 65.6
Sample D Male 76.5
Superior colliculi
nTPM: 62.0
Samples: 4

Max nTPM: 72.7
Min nTPM: 55.0
Sample A Female 58.4
Sample B Female 55.0
Sample C Male 72.7
Sample D Male 61.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.2
Samples: 4

Max nTPM: 16.0
Min nTPM: 11.4
Sample A Male 11.8
Sample B Male 16.0
Sample C Female 13.5
Sample D Female 11.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
70920027 Antisense, RP_050713_02_E09, Mouse strain C57BL/6J (56 days, male) 0.3
73512208 Antisense, RP_050713_02_E09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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