MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:10.3 nTPM
HPA:10.3 nTPM
GTEx:156.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 10.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.9
2666 Male, age 74, left hemisphere 16.0
2019 Male, age 18, unknown 14.5
1870 Female, age 42, unknown 14.1
2586 Male, age 75, left hemisphere 13.3
1833 Male, age 53, unknown 12.6
2828 Female, age 72, unknown 5.9
1827 Male, age 72, unknown 5.7
1830 Male, age 51, unknown 4.2
2411 Female, age 72, unknown 2.8
2219 Male, age 76, both hemispheres 0.0
Dorsal raphe nucleus
nTPM: 2.7
2016 Female, age 72, unknown 7.5
1828 Male, age 53, unknown 6.0
2047 Male, age 72, unknown 0.0
2298 Female, age 72, unknown 0.0
2750 Male, age 76, both hemispheres 0.0
Inferior colliculus
nTPM: 2.1
2849 Male, age 72, unknown 4.3
1848 Female, age 42, unknown 4.1
1890 Male, age 53, unknown 0.0
2097 Female, age 72, unknown 0.0
Median raphe nucleus
nTPM: 0.0
2220 Male, age 76, midline 0.0
Pedunculopontine tegmental nucleus
nTPM: 0.0
1921 Female, age 85, both hemispheres 0.0
2334 Male, age 80, both hemispheres 0.0
2338 Male, age 61, both hemispheres 0.0
Periaquaductal grey, anterior
nTPM: 0.0
1795 Male, age 51, unknown 0.0
1947 Male, age 18, unknown 0.0
2502 Female, age 75, unknown 0.0
Periaquaductal grey, dorsal
nTPM: 3.5
1831 Male, age 72, unknown 4.3
2464 Female, age 72, unknown 3.5
1840 Male, age 53, unknown 3.1
2850 Male, age 76, both hemispheres 3.1
Periaquaductal grey, lateral
nTPM: 10.3
2053 Male, age 18, unknown 30.9
2140 Male, age 76, both hemispheres 0.0
2272 Male, age 74, both hemispheres 0.0
Pretectal area
nTPM: 3.7
2825 Male, age 18, unknown 20.0
2407 Male, age 75, both hemispheres 7.2
1815 Male, age 53, unknown 7.1
2667 Female, age 75, unknown 4.1
1817 Female, age 42, unknown 3.0
1816 Male, age 51, unknown 0.0
1944 Female, age 72, unknown 0.0
2007 Male, age 72, unknown 0.0
2224 Female, age 72, unknown 0.0
2273 Male, age 74, both hemispheres 0.0
2316 Male, age 76, right hemisphere 0.0
Red nucleus
nTPM: 8.0
1821 Female, age 72, unknown 28.5
2823 Male, age 76, right hemisphere 22.4
2588 Male, age 74, left hemisphere 13.5
2584 Male, age 75, left hemisphere 11.7
1954 Female, age 42, unknown 9.2
1865 Male, age 51, unknown 7.2
1904 Male, age 53, unknown 3.3
2227 Male, age 72, unknown 0.0
2503 Female, age 72, unknown 0.0
2725 Female, age 75, unknown 0.0
2769 Male, age 72, unknown 0.0
2785 Male, age 18, unknown 0.0
Substantia nigra
nTPM: 7.5
2699 Male, age 18, unknown 34.5
2409 Female, age 72, unknown 13.4
2241 Male, age 72, unknown 12.5
2583 Male, age 75, right hemisphere 10.4
2665 Male, age 74, both hemispheres 2.2
1851 Male, age 51, unknown 1.6
1889 Female, age 72, unknown 0.2
1916 Female, age 42, unknown 0.0
1941 Male, age 53, unknown 0.0
2590 Female, age 75, unknown 0.0
Superior colliculus
nTPM: 6.7
2664 Male, age 75, both hemispheres 31.5
1995 Male, age 72, unknown 21.8
1895 Male, age 76, right hemisphere 6.0
1839 Male, age 51, unknown 3.7
2668 Female, age 75, unknown 2.9
2587 Male, age 74, left hemisphere 1.7
1913 Female, age 42, unknown 0.1
1796 Male, age 53, unknown 0.0
2087 Female, age 72, unknown 0.0
2261 Male, age 18, unknown 0.0
Ventral tegmental area
nTPM: 1.0
2410 Female, age 72, unknown 6.0
1915 Female, age 42, unknown 0.0
1942 Male, age 51, unknown 0.0
2021 Male, age 53, unknown 0.0
2218 Male, age 76, both hemispheres 0.0
2223 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 156.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 156.5
Samples: 139

Max nTPM: 610.1
Min nTPM: 40.4
Std nTPM: 73.5
Median nTPM: 143.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 610.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 375.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 365.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 355.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 301.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 284.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 284.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 277.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 273.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 269.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 265.7
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The Human Protein Atlas

The Human Protein Atlas project is funded
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