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UBA52
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:823.8 nTPM
HPA:823.8 nTPM
GTEx:917.7 nTPM
FANTOM5:179.1 Scaled Tags Per Million
Pig:298.2 nTPM
Mouse:361.1 nTPM
Allen mouse:24.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 823.8
Sample id Sample description nTPM
Amygdala
nTPM: 823.5
2695 Female, age 67, right hemisphere 859.1
2514 Male, age 75, right hemisphere 825.8
2814 Male, age 76, right hemisphere 811.5
2517 Female, age 94, left hemisphere 811.4
1987 Female, age 91, left hemisphere 809.8
Basal amygdala
nTPM: 804.8
2827 Female, age 67, right hemisphere 847.5
2609 Male, age 75, right hemisphere 818.6
2685 Female, age 94, left hemisphere 810.1
2243 Female, age 91, right hemisphere 791.8
2110 Male, age 80, left hemisphere 790.7
1955 Male, age 76, both hemispheres 770.3
Central amygdala
nTPM: 816.0
2826 Female, age 94, left hemisphere 916.7
2515 Male, age 75, right hemisphere 822.3
2239 Male, age 80, left hemisphere 787.3
1905 Male, age 76, both hemispheres 781.5
2701 Female, age 91, right hemisphere 772.0
Corticomedial amygdala
nTPM: 792.9
2428 Male, age 75, right hemisphere 820.8
2535 Female, age 67, right hemisphere 800.7
2829 Male, age 80, left hemisphere 796.4
2242 Female, age 91, right hemisphere 786.7
2429 Female, age 94, left hemisphere 785.8
2240 Male, age 76, both hemispheres 767.2
Lateral amygdala
nTPM: 823.8
2830 Female, age 67, right hemisphere 888.0
2516 Male, age 75, right hemisphere 857.0
2534 Female, age 94, left hemisphere 856.3
2256 Male, age 80, left hemisphere 799.5
2255 Female, age 91, right hemisphere 773.4
1883 Male, age 76, both hemispheres 768.4
Stria terminalis, bed nucleus
nTPM: 779.4
1974 Female, age 91, both hemispheres 806.4
2201 Male, age 74, unknown 771.9
2486 Female, age 94, both hemispheres 760.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 917.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 917.7
Samples: 152

Max nTPM: 2191.0
Min nTPM: 505.5
Std nTPM: 322.3
Median nTPM: 849.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2191.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2157.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2028.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2010.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1853.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1740.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1693.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1648.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1486.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1473.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1465.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1426.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1397.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1369.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1365.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1353.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1332.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1312.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1263.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1237.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1235.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1175.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1163.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1138.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1135.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1130.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1083.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1083.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1065.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1063.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1062.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1060.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1058.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1052.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1008.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1004.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 999.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 996.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 992.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 987.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 987.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 983.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 981.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 977.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 974.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 970.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 966.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 960.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 958.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 954.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 952.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 946.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 945.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 938.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 936.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 931.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 930.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 928.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 920.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 918.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 911.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 910.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 904.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 903.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 902.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 889.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 882.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 880.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 874.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 874.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 870.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 868.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 863.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 862.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 852.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 849.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 849.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 849.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 845.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 844.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 838.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 826.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 822.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 819.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 807.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 805.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 804.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 803.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 800.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 798.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 789.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 775.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 774.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 768.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 768.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 765.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 761.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 761.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 759.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 758.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 754.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 748.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 746.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 743.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 739.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 734.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 732.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 726.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 723.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 722.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 718.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 715.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 711.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 710.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 703.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 696.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 693.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 693.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 685.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 682.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 672.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 670.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 666.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 665.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 663.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 662.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 657.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 643.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 631.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 628.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 626.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 625.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 621.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 618.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 617.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 617.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 612.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 607.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 599.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 598.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 590.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 587.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 586.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 581.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 575.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 559.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 557.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 556.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 553.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 552.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 517.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 505.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 179.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 179.1
FF:10151-102I7 76 years, female 179.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 298.2
Pig sample Sample description nTPM
Amygdala
nTPM: 298.2
Samples: 4

Max nTPM: 410.5
Min nTPM: 194.7
Sample A Female 410.5
Sample B Female 301.1
Sample C Male 286.3
Sample D Male 194.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 361.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 361.1
Samples: 4

Max nTPM: 395.2
Min nTPM: 333.9
Sample A Male 333.9
Sample B Male 363.2
Sample C Female 395.2
Sample D Female 352.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 24.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 24.9
69013702 Antisense, RP_050309_02_G10, Mouse strain C57BL/6J (56 days, male) 24.9

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