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UBA52
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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:235.6 nTPM
GTEx:235.6 nTPM
FANTOM5:158.0 Scaled Tags Per Million
Pig:138.7 nTPM
Mouse:286.2 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 235.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 235.6
Samples: 105

Max nTPM: 324.8
Min nTPM: 74.5
Std nTPM: 54.6
Median nTPM:
321_1 62 years, female 324.8
377_1 82 years, female 320.8
218_1 71 years, female 319.3
379_1 60 years, male 313.4
376_1 75 years, female 307.3
320_1 89 years, female 304.5
322_1 76 years, male 302.8
319_1 81 years, male 296.5
452_1 88 years, female 296.4
237_1 82 years, male 294.2
447_1 81 years, male 293.0
177_1 74 years, male 292.4
41_1 94 years, female 291.4
375_1 74 years, female 290.3
189_1 76 years, male 289.5
35_1 74 years, female 288.7
394_1 75 years, female 288.7
404_1 82 years, female 288.4
384_1 83 years, male 286.5
173_1 67 years, male 284.4
153_1 70 years, female 281.3
246_1 77 years, male 280.1
351_1 91 years, male 279.7
406_1 79 years, male 278.6
526_1 61 years, male 277.4
354_1 81 years, female 276.8
243_1 75 years, male 276.5
4_1 88 years, female 275.9
389_1 86 years, female 275.2
353_1 82 years, female 274.4
317_1 60 years, male 272.6
120_1 70 years, female 271.9
172_1 72 years, female 270.5
386_1 76 years, male 269.3
425_1 59 years, female 268.8
6_1 73 years, female 267.7
2_1 77 years, female 265.5
355_1 70 years, female 264.6
335_1 73 years, female 264.4
163_1 78 years, male 263.9
254_1 77 years, female 262.9
99_1 64 years, male 261.5
137_1 83 years, male 260.5
295_1 61 years, female 260.3
405_1 91 years, male 256.0
318_1 68 years, male 255.7
316_1 62 years, male 254.3
349_1 83 years, male 253.6
352_1 62 years, male 253.0
350_1 84 years, female 252.5
506_1 65 years, male 251.2
17_1 71 years, male 249.9
347_1 72 years, male 246.9
145_1 84 years, male 246.8
503_1 68 years, male 246.0
115_1 83 years, male 244.9
229_1 69 years, female 241.5
264_1 73 years, female 241.4
18_1 88 years, male 240.1
251_1 78 years, male 238.9
307_1 66 years, female 235.0
109_1 81 years, female 233.6
293_1 68 years, female 233.1
266_1 85 years, male 232.5
286_1 68 years, female 229.7
311_1 78 years, male 227.3
348_1 84 years, male 225.9
396_1 62 years, male 224.4
480_1 63 years, male 219.1
292_1 71 years, male 218.3
265_1 87 years, male 213.8
126_1 63 years, male 210.2
291_1 76 years, male 208.8
117_1 61 years, male 206.7
324_1 76 years, male 206.4
313_1 79 years, female 205.6
356_1 87 years, female 204.4
518_1 75 years, female 202.2
499_1 55 years, female 200.8
42_1 85 years, male 200.0
308_1 70 years, female 199.7
468_1 89 years, male 198.0
314_1 67 years, male 197.4
517_1 88 years, male 196.3
288_1 66 years, female 195.1
9_1 66 years, female 193.3
495_1 57 years, female 191.6
81_1 67 years, male 185.6
119_1 70 years, female 184.9
217_1 76 years, male 183.8
315_1 62 years, female 183.8
162_1 79 years, female 176.3
139_1 64 years, female 171.5
142_1 61 years, female 169.0
89_1 63 years, male 161.8
415_1 77 years, female 154.0
414_1 84 years, female 145.4
32_1 67 years, male 134.2
43_1 64 years, female 128.1
466_1 57 years, female 127.3
501_1 88 years, male 124.6
149_1 88 years, male 99.7
413_1 59 years, female 98.2
490_1 67 years, female 79.1
491_1 89 years, female 74.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 158.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 158.0
FF:10030-101E3 24-65 years, mixed 158.0

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 138.7
Pig sample Sample description nTPM
Retina
nTPM: 138.7
Samples: 4

Max nTPM: 172.5
Min nTPM: 120.9
Sample A Female 132.2
Sample B Female 129.2
Sample C Male 172.5
Sample D Male 120.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 286.2
Mouse sample Sample description nTPM
Retina
nTPM: 286.2
Samples: 4

Max nTPM: 375.4
Min nTPM: 219.3
Sample A Male 303.6
Sample B Male 246.5
Sample C Female 375.4
Sample D Female 219.3

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.