We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
UBA52
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • UBA52
BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:858.2 nTPM
HPA:858.2 nTPM
FANTOM5:191.7 Scaled Tags Per Million
Pig:408.1 nTPM
Allen mouse:16.9 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 858.2
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 814.4
2090 Male, age 80, both hemispheres 833.6
2188 Female, age 91, both hemispheres 828.9
2301 Female, age 85, both hemispheres 812.9
1984 Male, age 76, both hemispheres 782.2
Dorsal cochlear nucleus
nTPM: 819.5
2802 Male, age 74, right hemisphere 850.5
2187 Female, age 91, both hemispheres 830.8
2370 Male, age 61, both hemispheres 822.5
2378 Male, age 80, both hemispheres 805.4
2058 Male, age 76, both hemispheres 788.2
Dorsal tegmental nucleus
nTPM: 820.6
2326 Male, age 74, both hemispheres 838.5
2083 Male, age 80, both hemispheres 836.8
2358 Male, age 61, both hemispheres 823.6
1936 Male, age 76, left hemisphere 783.6
Dorsolateral tegmental area
nTPM: 824.5
2337 Male, age 61, both hemispheres 873.8
2654 Male, age 80, both hemispheres 843.7
2751 Female, age 85, both hemispheres 822.4
2360 Male, age 74, both hemispheres 794.0
2141 Male, age 76, both hemispheres 788.8
Kolliker-Fuse nucleus
nTPM: 817.6
2315 Male, age 76, right hemisphere 824.0
2163 Male, age 80, both hemispheres 815.2
2793 Female, age 91, left hemisphere 813.5
Lateral lemniscal nuclei
nTPM: 795.3
2036 Male, age 80, both hemispheres 808.2
2169 Male, age 76, both hemispheres 797.8
2746 Female, age 85, left hemisphere 797.0
2320 Female, age 91, left hemisphere 792.1
2453 Male, age 74, right hemisphere 781.6
Lateral parabrachial nucleus
nTPM: 825.0
2013 Male, age 80, both hemispheres 844.7
2792 Male, age 76, both hemispheres 843.6
2139 Female, age 85, right hemisphere 812.3
2790 Male, age 61, both hemispheres 799.5
Lateral vestibular nucleus
nTPM: 808.9
2311 Male, age 80, both hemispheres 823.4
2184 Male, age 76, both hemispheres 794.3
Locus coeruleus
nTPM: 814.6
2123 Female, age 91, both hemispheres 835.0
2720 Male, age 74, both hemispheres 830.8
2014 Male, age 55, unknown 828.1
1980 Male, age 76, both hemispheres 812.3
2317 Female, age 72, unknown 808.6
2162 Male, age 80, both hemispheres 808.4
2788 Male, age 74, unknown 779.0
Medial olivary nucleus
nTPM: 858.2
1943 Male, age 61, both hemispheres 889.3
1962 Male, age 76, both hemispheres 861.5
2138 Female, age 91, both hemispheres 846.6
2851 Male, age 80, both hemispheres 835.5
Medial parabrachial nucleus
nTPM: 815.2
2170 Female, age 91, both hemispheres 856.9
2854 Male, age 80, both hemispheres 816.2
2156 Male, age 61, both hemispheres 809.7
2463 Female, age 85, right hemisphere 803.9
2786 Male, age 76, both hemispheres 789.1
Medial periolivary nuclei
nTPM: 794.5
2063 Male, age 76, both hemispheres 810.5
2458 Female, age 91, both hemispheres 795.7
2081 Male, age 80, both hemispheres 792.5
2171 Female, age 85, both hemispheres 787.2
2791 Male, age 74, right hemisphere 786.7
Motor facial nucleus
nTPM: 796.4
2795 Female, age 91, both hemispheres 811.5
2697 Female, age 85, both hemispheres 804.4
2062 Male, age 76, both hemispheres 801.4
2365 Male, age 74, right hemisphere 800.7
2126 Male, age 61, both hemispheres 795.2
2327 Male, age 80, both hemispheres 765.0
Motor trigeminal nucleus
nTPM: 799.5
2335 Male, age 61, both hemispheres 820.6
2560 Male, age 74, both hemispheres 811.1
2321 Female, age 91, both hemispheres 800.3
2309 Male, age 76, both hemispheres 790.5
2079 Male, age 80, both hemispheres 775.0
Nuclei of the trapezoid body
nTPM: 791.9
1983 Male, age 76, both hemispheres 815.0
2166 Male, age 80, both hemispheres 796.0
2735 Female, age 85, both hemispheres 784.5
2368 Female, age 91, both hemispheres 782.8
2159 Male, age 61, both hemispheres 781.2
Paramedian reticular nucleus
nTPM: 807.5
2313 Male, age 61, both hemispheres 814.5
2050 Female, age 85, both hemispheres 809.6
2057 Male, age 80, both hemispheres 808.5
2052 Male, age 76, both hemispheres 797.5
Pontine nuclei
nTPM: 806.4
2787 Female, age 85, both hemispheres 827.0
2319 Female, age 91, both hemispheres 824.3
1863 Male, age 55, unknown 819.9
2454 Male, age 74, left hemisphere 803.1
2109 Female, age 72, unknown 801.1
1968 Male, age 76, left hemisphere 796.7
2115 Male, age 80, left hemisphere 791.7
2727 Male, age 61, right hemisphere 787.4
Pontine raphe nucleus
nTPM: 797.1
2122 Female, age 85, midline 803.3
2853 Male, age 76, midline 790.8
Posteroventral cochlear nucleus
nTPM: 824.9
2341 Male, age 80, both hemispheres 839.1
2371 Male, age 61, both hemispheres 838.5
2135 Female, age 91, both hemispheres 834.5
2070 Male, age 76, both hemispheres 808.5
2752 Female, age 85, both hemispheres 803.8
Principal sensory trigeminal nucleus
nTPM: 789.9
2158 Male, age 61, both hemispheres 798.3
2367 Female, age 91, left hemisphere 795.9
2324 Male, age 76, both hemispheres 795.2
2008 Male, age 80, left hemisphere 770.2
Reticular pontine nucleus, caudal
nTPM: 796.0
2092 Male, age 76, both hemispheres 812.0
2559 Male, age 74, both hemispheres 811.5
2457 Female, age 91, both hemispheres 794.4
2332 Male, age 80, right hemisphere 766.1
Reticular pontine nucleus, oral
nTPM: 803.5
2366 Female, age 91, both hemispheres 820.2
2167 Male, age 76, both hemispheres 810.6
1939 Male, age 80, both hemispheres 806.2
2012 Female, age 85, both hemispheres 795.7
2361 Male, age 74, both hemispheres 785.1
Reticulotegmental nucleus
nTPM: 800.6
2452 Male, age 74, both hemispheres 827.8
2322 Female, age 91, both hemispheres 806.4
2333 Male, age 80, both hemispheres 786.4
2325 Male, age 76, both hemispheres 781.6
Spinal trigeminal nucleus, oral
nTPM: 795.4
2164 Male, age 80, both hemispheres 806.6
2737 Female, age 85, both hemispheres 791.5
1978 Male, age 76, both hemispheres 788.2
Subcoeruleus area
nTPM: 809.6
2451 Male, age 74, both hemispheres 844.6
2369 Female, age 85, left hemisphere 816.4
2323 Female, age 91, left hemisphere 807.7
1958 Male, age 80, both hemispheres 804.2
2089 Male, age 76, left hemisphere 775.3
Superior olive
nTPM: 790.9
2020 Male, age 76, both hemispheres 805.6
2561 Female, age 91, both hemispheres 799.3
2364 Male, age 74, right hemisphere 793.7
1875 Female, age 85, both hemispheres 779.7
2329 Male, age 80, right hemisphere 776.3
Superior vestibular nucleus
nTPM: 810.1
2015 Male, age 80, both hemispheres 825.1
2383 Male, age 74, both hemispheres 815.7
2061 Male, age 76, both hemispheres 789.6
Ventral periolivary nuclei
nTPM: 796.1
2023 Male, age 76, both hemispheres 810.3
2165 Male, age 80, both hemispheres 798.4
2130 Female, age 85, both hemispheres 788.7
2794 Female, age 91, left hemisphere 786.9
Ventrolateral tegmental area, A5 NE cell group
nTPM: 802.2
2359 Male, age 61, both hemispheres 825.0
2161 Male, age 80, both hemispheres 804.9
1959 Male, age 76, both hemispheres 801.5
2456 Female, age 91, both hemispheres 799.8
2840 Female, age 85, both hemispheres 791.2
2449 Male, age 74, both hemispheres 790.7

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 191.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 191.7
FF:10182-103D2 60 years, female 202.4
FF:10165-103B3 76 years, female 181.0
Pons
Scaled Tags Per Million: 113.4
FF:10033-101E6 18-54 years, mixed 113.4

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 408.1
Pig sample Sample description nTPM
Pons
nTPM: 408.1
Samples: 4

Max nTPM: 494.9
Min nTPM: 258.3
Sample A Female 454.9
Sample B Female 258.3
Sample C Male 424.2
Sample D Male 494.9

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 16.9
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 16.9
69013702 Antisense, RP_050309_02_G10, Mouse strain C57BL/6J (56 days, male) 16.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.