MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:825.6 nTPM
HPA:825.6 nTPM
GTEx:895.0 nTPM
FANTOM5:181.6 Scaled Tags Per Million
Pig:389.6 nTPM
Mouse:220.6 nTPM
Allen mouse:20.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 825.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 804.1
2666 Male, age 74, left hemisphere 833.1
2586 Male, age 75, left hemisphere 819.0
2411 Female, age 72, unknown 815.9
1870 Female, age 42, unknown 809.7
2219 Male, age 76, both hemispheres 798.4
2828 Female, age 72, unknown 797.6
1827 Male, age 72, unknown 797.5
1833 Male, age 53, unknown 792.7
1830 Male, age 51, unknown 789.7
2019 Male, age 18, unknown 787.8
Dorsal raphe nucleus
nTPM: 803.6
2298 Female, age 72, unknown 826.1
2750 Male, age 76, both hemispheres 813.3
2047 Male, age 72, unknown 794.6
1828 Male, age 53, unknown 794.0
2016 Female, age 72, unknown 790.0
Inferior colliculus
nTPM: 785.9
2097 Female, age 72, unknown 790.1
1890 Male, age 53, unknown 786.9
2849 Male, age 72, unknown 785.6
1848 Female, age 42, unknown 781.2
Median raphe nucleus
nTPM: 811.6
2220 Male, age 76, midline 811.6
Pedunculopontine tegmental nucleus
nTPM: 821.3
2338 Male, age 61, both hemispheres 842.9
2334 Male, age 80, both hemispheres 832.0
1921 Female, age 85, both hemispheres 788.9
Periaquaductal grey, anterior
nTPM: 814.5
2502 Female, age 75, unknown 823.2
1795 Male, age 51, unknown 811.7
1947 Male, age 18, unknown 808.7
Periaquaductal grey, dorsal
nTPM: 792.4
1840 Male, age 53, unknown 801.2
1831 Male, age 72, unknown 801.1
2850 Male, age 76, both hemispheres 785.6
2464 Female, age 72, unknown 781.5
Periaquaductal grey, lateral
nTPM: 779.4
2053 Male, age 18, unknown 796.8
2140 Male, age 76, both hemispheres 775.2
2272 Male, age 74, both hemispheres 766.2
Pretectal area
nTPM: 793.7
1816 Male, age 51, unknown 815.6
1815 Male, age 53, unknown 811.3
1817 Female, age 42, unknown 807.9
2224 Female, age 72, unknown 804.5
2007 Male, age 72, unknown 797.3
2825 Male, age 18, unknown 792.7
2316 Male, age 76, right hemisphere 790.2
1944 Female, age 72, unknown 788.5
2407 Male, age 75, both hemispheres 780.1
2667 Female, age 75, unknown 779.2
2273 Male, age 74, both hemispheres 763.6
Red nucleus
nTPM: 806.2
2503 Female, age 72, unknown 838.5
1821 Female, age 72, unknown 825.6
1865 Male, age 51, unknown 816.7
1904 Male, age 53, unknown 811.8
2588 Male, age 74, left hemisphere 808.4
2725 Female, age 75, unknown 806.5
2584 Male, age 75, left hemisphere 804.5
2227 Male, age 72, unknown 802.4
2769 Male, age 72, unknown 802.0
2785 Male, age 18, unknown 793.5
1954 Female, age 42, unknown 789.4
2823 Male, age 76, right hemisphere 774.3
Substantia nigra
nTPM: 821.7
1851 Male, age 51, unknown 854.8
2699 Male, age 18, unknown 848.5
1916 Female, age 42, unknown 845.2
2665 Male, age 74, both hemispheres 834.8
2409 Female, age 72, unknown 822.1
2241 Male, age 72, unknown 817.0
2590 Female, age 75, unknown 811.2
1889 Female, age 72, unknown 806.6
1941 Male, age 53, unknown 796.9
2583 Male, age 75, right hemisphere 779.5
Superior colliculus
nTPM: 804.8
2587 Male, age 74, left hemisphere 831.4
2668 Female, age 75, unknown 819.2
1913 Female, age 42, unknown 817.8
1796 Male, age 53, unknown 814.9
1995 Male, age 72, unknown 814.6
2664 Male, age 75, both hemispheres 799.2
2261 Male, age 18, unknown 794.8
2087 Female, age 72, unknown 788.2
1895 Male, age 76, right hemisphere 785.5
1839 Male, age 51, unknown 782.2
Ventral tegmental area
nTPM: 825.6
2410 Female, age 72, unknown 845.2
1915 Female, age 42, unknown 842.5
2223 Female, age 72, unknown 828.9
2021 Male, age 53, unknown 821.8
2218 Male, age 76, both hemispheres 813.4
1942 Male, age 51, unknown 801.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 895.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 895.0
Samples: 139

Max nTPM: 3075.6
Min nTPM: 383.8
Std nTPM: 329.1
Median nTPM: 833.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 3075.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1864.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1843.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1651.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1633.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1580.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1496.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1455.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1420.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1311.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1294.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 181.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 181.6
FF:10158-103A5 76 years, female 181.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 389.6
Pig sample Sample description nTPM
Midbrain
nTPM: 387.7
Samples: 4

Max nTPM: 553.7
Min nTPM: 288.8
Sample A Female 553.7
Sample B Female 372.0
Sample C Male 336.3
Sample D Male 288.8
Periaqueductal gray
nTPM: 308.7
Samples: 3

Max nTPM: 336.5
Min nTPM: 292.7
Sample B Female 297.0
Sample C Male 336.5
Sample D Male 292.7
Substantia nigra
nTPM: 389.6
Samples: 4

Max nTPM: 473.8
Min nTPM: 351.1
Sample A Female 473.8
Sample B Female 366.0
Sample C Male 351.1
Sample D Male 367.4
Superior colliculi
nTPM: 381.2
Samples: 4

Max nTPM: 471.0
Min nTPM: 301.9
Sample A Female 471.0
Sample B Female 301.9
Sample C Male 375.5
Sample D Male 376.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 220.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 220.5
Samples: 4

Max nTPM: 246.9
Min nTPM: 190.6
Sample A Male 246.9
Sample B Male 204.4
Sample C Female 190.6
Sample D Female 240.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 20.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.8
69013702 Antisense, RP_050309_02_G10, Mouse strain C57BL/6J (56 days, male) 20.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.