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UBA52
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:916.6 nTPM
HPA:537.6 nTPM
GTEx:916.6 nTPM
FANTOM5:164.1 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA041344Antibody HPA049132
Glandular cells MediumHigh





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 537.6
overview
Male, age 65
Small intestine sample 232
nTPM: 554.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 615.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 502.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 476.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 916.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 916.6
Samples: 187

Max nTPM: 1767.3
Min nTPM: 462.6
Std nTPM: 254.6
Median nTPM: 873.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1767.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1737.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1637.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1636.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1623.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1611.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1460.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1456.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1436.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1388.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1387.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1369.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1344.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1318.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1313.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 1301.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1277.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1274.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1269.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1263.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1262.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1228.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1225.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1205.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1204.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1199.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1182.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1180.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1159.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1159.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1149.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1147.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1140.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1129.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1128.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1126.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1121.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1115.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1109.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1109.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1105.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1104.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1100.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1091.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1086.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1077.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1075.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1065.8
GTEX-1192X-2526-SM-59868 50-59 years, male 1052.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1040.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1030.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1023.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 1020.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1020.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1019.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1019.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1014.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 997.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 988.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 986.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 985.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 980.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 977.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 966.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 963.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 959.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 957.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 956.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 953.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 952.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 941.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 940.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 938.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 937.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 934.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 934.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 930.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 929.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 916.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 914.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 909.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 903.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 903.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 902.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 896.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 894.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 889.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 887.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 886.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 882.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 879.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 877.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 877.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 873.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 871.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 870.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 868.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 868.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 854.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 842.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 839.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 835.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 834.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 829.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 826.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 819.6
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 815.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 813.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 805.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 799.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 796.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 789.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 788.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 787.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 786.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 784.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 783.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 782.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 780.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 780.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 777.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 777.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 772.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 769.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 767.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 762.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 761.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 758.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 756.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 756.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 755.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 751.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 750.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 746.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 743.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 743.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 742.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 742.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 740.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 739.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 736.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 736.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 735.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 730.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 726.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 725.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 721.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 720.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 717.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 715.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 708.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 702.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 699.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 689.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 685.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 682.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 680.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 677.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 677.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 677.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 674.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 672.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 671.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 668.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 666.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 663.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 661.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 650.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 642.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 635.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 630.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 625.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 625.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 611.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 605.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 602.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 595.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 592.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 588.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 580.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 578.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 566.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 562.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 527.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 514.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 489.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 462.6
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 164.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 164.1
FF:10024-101D6 15,40,85 years, mixed 164.1

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