BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:1.0 nTPM
HPA:1.0 nTPM
GTEx:28.4 nTPM
FANTOM5:116.4 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA011078
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.7
2481 Female, age 94, left hemisphere 1.1
2290 Female, age 72, unknown 0.9
1781 Male, age 74, unknown 0.8
2289 Male, age 61, right hemisphere 0.8
1857 Female, age 85, left hemisphere 0.7
2846 Female, age 79, unknown 0.6
1854 Male, age 80, left hemisphere 0.5
2288 Male, age 75, left hemisphere 0.4
Claustrum
nTPM: 0.4
1956 Male, age 74, unknown 0.7
2198 Male, age 80, both hemispheres 0.5
2568 Male, age 61, both hemispheres 0.5
2645 Female, age 72, unknown 0.5
2284 Female, age 91, both hemispheres 0.4
2292 Female, age 85, both hemispheres 0.3
2196 Female, age 79, unknown 0.2
2392 Female, age 94, both hemispheres 0.2
2491 Male, age 75, both hemispheres 0.2
Globus pallidus, externus
nTPM: 1.0
2395 Male, age 75, both hemispheres 1.4
2772 Female, age 79, unknown 1.4
1996 Male, age 80, right hemisphere 0.8
2567 Female, age 72, unknown 0.6
2646 Male, age 61, right hemisphere 0.5
Globus pallidus, internus
nTPM: 0.8
2037 Male, age 80, right hemisphere 1.0
2483 Female, age 94, right hemisphere 1.0
1818 Male, age 74, unknown 0.9
2566 Female, age 72, unknown 0.8
2778 Female, age 91, both hemispheres 0.7
2111 Female, age 85, right hemisphere 0.5
2287 Male, age 75, right hemisphere 0.5
Nucleus accumbens
nTPM: 0.7
2391 Female, age 94, left hemisphere 0.8
2824 Male, age 61, right hemisphere 0.8
1856 Female, age 91, right hemisphere 0.7
2698 Female, age 72, unknown 0.7
2732 Male, age 80, right hemisphere 0.7
1806 Female, age 85, left hemisphere 0.6
1783 Male, age 74, unknown 0.5
2286 Male, age 75, left hemisphere 0.5
Nucleus basalis of Meynert
nTPM: 0.8
2393 Male, age 80, right hemisphere 0.9
2484 Female, age 94, left hemisphere 0.8
2821 Male, age 75, both hemispheres 0.8
2569 Male, age 61, both hemispheres 0.6
Nucleus of the diagonal band
nTPM: 0.6
1812 Female, age 91, both hemispheres 0.8
2195 Female, age 85, both hemispheres 0.7
1979 Male, age 74, unknown 0.6
2029 Male, age 61, right hemisphere 0.5
2775 Male, age 80, right hemisphere 0.5
Olfactory tubercle
nTPM: 0.5
2487 Female, age 94, left hemisphere 0.7
1846 Male, age 80, right hemisphere 0.6
2856 Male, age 75, right hemisphere 0.5
1998 Female, age 91, both hemispheres 0.1
Putamen
nTPM: 0.8
2482 Female, age 94, left hemisphere 1.2
2489 Female, age 72, unknown 1.0
1829 Male, age 74, unknown 0.8
1838 Male, age 80, right hemisphere 0.7
1937 Female, age 91, right hemisphere 0.6
2466 Female, age 79, unknown 0.5
2647 Male, age 75, left hemisphere 0.3
Septal nuclei
nTPM: 0.7
2059 Female, age 85, both hemispheres 0.8
2031 Female, age 72, unknown 0.7
2199 Male, age 80, right hemisphere 0.7
2394 Male, age 61, left hemisphere 0.7
2629 Female, age 94, right hemisphere 0.7
2009 Female, age 91, both hemispheres 0.6
1960 Male, age 74, unknown 0.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 28.4
Samples: 246

Max nTPM: 150.6
Min nTPM: 6.2
Std nTPM: 20.7
Median nTPM: 22.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 150.6
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 119.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 117.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 98.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 96.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 91.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 88.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 87.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 80.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 75.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 73.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 21.9
Samples: 246

Max nTPM: 98.0
Min nTPM: 3.2
Std nTPM: 15.1
Median nTPM: 17.8
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 98.0
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 97.4
GTEX-183WM-0011-R6b-SM-72D66 70-79 years, female 77.3
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 76.4
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 76.1
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 68.1
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 66.8
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 64.5
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 62.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 57.6
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 55.8
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Brain - Putamen (basal ganglia)
Average nTPM: 24.4
Samples: 205

Max nTPM: 103.7
Min nTPM: 3.9
Std nTPM: 13.3
Median nTPM: 21.3
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 103.7
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 64.9
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 62.3
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 60.6
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 59.6
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 59.4
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 58.8
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 57.4
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 55.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 52.6
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 52.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 116.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 75.6
FF:10164-103B2 76 years, female 75.6
Globus pallidus
Scaled Tags Per Million: 116.4
FF:10161-103A8 76 years, female 176.8
FF:10175-103C4 60 years, female 56.0
Nucleus accumbens
Scaled Tags Per Million: 36.0
FF:10037-101F1 23-56 years, mixed 36.0
Putamen
Scaled Tags Per Million: 38.1
FF:10176-103C5 60 years, female 38.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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