MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:22.2 nTPM
HPA:22.2 nTPM
GTEx:26.5 nTPM
FANTOM5:22.9 Scaled Tags Per Million
Mouse:19.8 nTPM
Allen mouse:4.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.2
2828 Female, age 72, unknown 25.5
2586 Male, age 75, left hemisphere 24.3
2666 Male, age 74, left hemisphere 19.6
1870 Female, age 42, unknown 19.4
1827 Male, age 72, unknown 18.8
2019 Male, age 18, unknown 18.4
1830 Male, age 51, unknown 17.8
1833 Male, age 53, unknown 17.5
2411 Female, age 72, unknown 16.3
2219 Male, age 76, both hemispheres 13.9
Dorsal raphe nucleus
nTPM: 20.3
2298 Female, age 72, unknown 24.7
2016 Female, age 72, unknown 22.2
1828 Male, age 53, unknown 21.3
2047 Male, age 72, unknown 18.2
2750 Male, age 76, both hemispheres 15.0
Inferior colliculus
nTPM: 18.8
2097 Female, age 72, unknown 19.4
1848 Female, age 42, unknown 19.1
1890 Male, age 53, unknown 18.8
2849 Male, age 72, unknown 18.1
Median raphe nucleus
nTPM: 13.6
2220 Male, age 76, midline 13.6
Pedunculopontine tegmental nucleus
nTPM: 14.6
1921 Female, age 85, both hemispheres 15.3
2334 Male, age 80, both hemispheres 14.7
2338 Male, age 61, both hemispheres 13.7
Periaquaductal grey, anterior
nTPM: 22.2
1795 Male, age 51, unknown 25.0
2502 Female, age 75, unknown 21.6
1947 Male, age 18, unknown 19.9
Periaquaductal grey, dorsal
nTPM: 22.2
2850 Male, age 76, both hemispheres 24.7
1831 Male, age 72, unknown 22.8
1840 Male, age 53, unknown 22.2
2464 Female, age 72, unknown 19.2
Periaquaductal grey, lateral
nTPM: 22.2
2140 Male, age 76, both hemispheres 24.2
2053 Male, age 18, unknown 22.3
2272 Male, age 74, both hemispheres 20.3
Pretectal area
nTPM: 20.1
2273 Male, age 74, both hemispheres 26.7
2667 Female, age 75, unknown 21.1
2825 Male, age 18, unknown 20.7
1815 Male, age 53, unknown 20.1
2316 Male, age 76, right hemisphere 20.0
1817 Female, age 42, unknown 19.5
1944 Female, age 72, unknown 19.4
2407 Male, age 75, both hemispheres 19.3
2224 Female, age 72, unknown 19.2
1816 Male, age 51, unknown 17.7
2007 Male, age 72, unknown 17.2
Red nucleus
nTPM: 21.4
2769 Male, age 72, unknown 24.6
2503 Female, age 72, unknown 24.4
2227 Male, age 72, unknown 23.9
2725 Female, age 75, unknown 22.0
1821 Female, age 72, unknown 21.6
1904 Male, age 53, unknown 21.5
1954 Female, age 42, unknown 21.3
2823 Male, age 76, right hemisphere 21.0
1865 Male, age 51, unknown 20.1
2785 Male, age 18, unknown 19.7
2588 Male, age 74, left hemisphere 18.5
2584 Male, age 75, left hemisphere 18.0
Substantia nigra
nTPM: 17.3
2699 Male, age 18, unknown 20.7
1851 Male, age 51, unknown 19.2
1916 Female, age 42, unknown 18.6
2409 Female, age 72, unknown 18.3
1889 Female, age 72, unknown 17.4
2583 Male, age 75, right hemisphere 17.3
1941 Male, age 53, unknown 16.2
2590 Female, age 75, unknown 15.9
2665 Male, age 74, both hemispheres 14.9
2241 Male, age 72, unknown 14.6
Superior colliculus
nTPM: 20.5
1995 Male, age 72, unknown 24.8
2664 Male, age 75, both hemispheres 23.7
1913 Female, age 42, unknown 22.8
1796 Male, age 53, unknown 20.4
2668 Female, age 75, unknown 20.4
2087 Female, age 72, unknown 20.1
2587 Male, age 74, left hemisphere 19.4
2261 Male, age 18, unknown 19.0
1839 Male, age 51, unknown 18.3
1895 Male, age 76, right hemisphere 15.7
Ventral tegmental area
nTPM: 18.1
1915 Female, age 42, unknown 20.1
1942 Male, age 51, unknown 19.3
2410 Female, age 72, unknown 19.0
2021 Male, age 53, unknown 18.2
2223 Female, age 72, unknown 16.4
2218 Male, age 76, both hemispheres 15.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.5
Samples: 139

Max nTPM: 73.3
Min nTPM: 4.7
Std nTPM: 11.4
Median nTPM: 24.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 73.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 69.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 52.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 50.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 49.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 47.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 46.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 45.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 43.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 43.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 43.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.9
FF:10158-103A5 76 years, female 22.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.8
Samples: 4

Max nTPM: 22.3
Min nTPM: 18.2
Sample A Male 22.3
Sample B Male 19.1
Sample C Female 19.5
Sample D Female 18.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.4
293664 Antisense, RP_040604_02_H03, Mouse strain C57BL/6J (56 days, male) 6.6
74357603 Antisense, RP_060119_03_A06, Mouse strain C57BL/6J (56 days, male) 2.3

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.