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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:359.4 nTPM
HPA:359.4 nTPM
GTEx:230.4 nTPM
FANTOM5:293.3 Scaled Tags Per Million
Mouse:99.6 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 359.4
Sample id Sample description nTPM
Amygdala
nTPM: 359.4
2514 Male, age 75, right hemisphere 363.2
2814 Male, age 76, right hemisphere 362.2
1987 Female, age 91, left hemisphere 361.4
2695 Female, age 67, right hemisphere 356.5
2517 Female, age 94, left hemisphere 353.6
Basal amygdala
nTPM: 350.0
2609 Male, age 75, right hemisphere 361.3
1955 Male, age 76, both hemispheres 355.5
2110 Male, age 80, left hemisphere 348.0
2243 Female, age 91, right hemisphere 347.7
2685 Female, age 94, left hemisphere 345.8
2827 Female, age 67, right hemisphere 341.9
Central amygdala
nTPM: 358.5
1905 Male, age 76, both hemispheres 367.3
2515 Male, age 75, right hemisphere 361.8
2826 Female, age 94, left hemisphere 358.0
2701 Female, age 91, right hemisphere 356.8
2239 Male, age 80, left hemisphere 348.7
Corticomedial amygdala
nTPM: 353.5
2428 Male, age 75, right hemisphere 360.8
2242 Female, age 91, right hemisphere 358.6
2240 Male, age 76, both hemispheres 358.4
2429 Female, age 94, left hemisphere 355.6
2829 Male, age 80, left hemisphere 349.4
2535 Female, age 67, right hemisphere 338.2
Lateral amygdala
nTPM: 351.5
2516 Male, age 75, right hemisphere 358.8
1883 Male, age 76, both hemispheres 356.5
2256 Male, age 80, left hemisphere 349.6
2830 Female, age 67, right hemisphere 349.0
2534 Female, age 94, left hemisphere 348.5
2255 Female, age 91, right hemisphere 346.7
Stria terminalis, bed nucleus
nTPM: 347.4
2201 Male, age 74, unknown 349.8
1974 Female, age 91, both hemispheres 348.0
2486 Female, age 94, both hemispheres 344.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 230.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 230.4
Samples: 152

Max nTPM: 572.1
Min nTPM: 95.1
Std nTPM: 70.9
Median nTPM: 216.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 572.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 526.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 449.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 435.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 405.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 398.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 387.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 337.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 335.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 332.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 330.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 320.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 320.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 306.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 303.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 301.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 300.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 299.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 298.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 297.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 296.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 294.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 294.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 289.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 284.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 284.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 283.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 282.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 278.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 277.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 274.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 271.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 264.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 263.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 263.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 261.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 259.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 258.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 258.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 257.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 257.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 255.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 255.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 254.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 253.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 253.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 251.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 250.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 246.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 243.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 243.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 243.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 243.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 241.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 241.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 241.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 240.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 238.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 237.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 236.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 236.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 235.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 235.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 234.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 231.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 229.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 228.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 226.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 225.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 224.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 224.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 220.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 219.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 219.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 216.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 216.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 215.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 215.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 215.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 214.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 214.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 214.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 214.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 213.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 211.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 208.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 207.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 206.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 205.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 202.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 200.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 200.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 199.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 199.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 198.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 198.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 198.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 196.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 196.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 196.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 196.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 195.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 194.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 194.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 194.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 194.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 193.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 192.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 190.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 190.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 190.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 189.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 189.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 187.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 186.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 185.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 184.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 183.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 183.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 182.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 180.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 180.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 179.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 179.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 177.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 174.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 174.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 174.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 171.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 171.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 169.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 166.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 161.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 160.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 159.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 156.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 156.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 155.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 154.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 153.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 151.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 151.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 149.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 147.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 146.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 140.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 135.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 133.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 130.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 113.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 112.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 95.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 293.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 293.3
FF:10151-102I7 76 years, female 293.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 99.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 99.6
Samples: 4

Max nTPM: 116.8
Min nTPM: 93.4
Sample A Male 93.5
Sample B Male 94.7
Sample C Female 116.8
Sample D Female 93.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
631702 Antisense, RP_040907_01_A02, Mouse strain C57BL/6J (56 days, male) 0.0

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