We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
OST4
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • OST4
BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:375.8 nTPM
HPA:375.8 nTPM
FANTOM5:316.2 Scaled Tags Per Million
Allen mouse:0.5 Expression energy

PONS - Annotated protein expression
Pending normal tissue analysis

PONS - HPA Brain RNA-seq
Max nTPM 375.8
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 355.7
2090 Male, age 80, both hemispheres 365.8
2188 Female, age 91, both hemispheres 357.4
2301 Female, age 85, both hemispheres 353.4
1984 Male, age 76, both hemispheres 346.1
Dorsal cochlear nucleus
nTPM: 363.5
2370 Male, age 61, both hemispheres 368.6
2378 Male, age 80, both hemispheres 367.7
2187 Female, age 91, both hemispheres 363.9
2802 Male, age 74, right hemisphere 362.6
2058 Male, age 76, both hemispheres 354.8
Dorsal tegmental nucleus
nTPM: 369.4
2358 Male, age 61, both hemispheres 393.2
2083 Male, age 80, both hemispheres 362.9
2326 Male, age 74, both hemispheres 361.4
1936 Male, age 76, left hemisphere 360.1
Dorsolateral tegmental area
nTPM: 369.5
2337 Male, age 61, both hemispheres 389.2
2654 Male, age 80, both hemispheres 369.0
2751 Female, age 85, both hemispheres 366.1
2360 Male, age 74, both hemispheres 365.4
2141 Male, age 76, both hemispheres 357.7
Kolliker-Fuse nucleus
nTPM: 363.0
2315 Male, age 76, right hemisphere 374.0
2163 Male, age 80, both hemispheres 358.3
2793 Female, age 91, left hemisphere 356.7
Lateral lemniscal nuclei
nTPM: 346.9
2169 Male, age 76, both hemispheres 354.6
2746 Female, age 85, left hemisphere 349.6
2036 Male, age 80, both hemispheres 347.2
2320 Female, age 91, left hemisphere 342.8
2453 Male, age 74, right hemisphere 340.5
Lateral parabrachial nucleus
nTPM: 366.0
2792 Male, age 76, both hemispheres 378.6
2013 Male, age 80, both hemispheres 363.2
2790 Male, age 61, both hemispheres 362.3
2139 Female, age 85, right hemisphere 359.9
Lateral vestibular nucleus
nTPM: 362.9
2311 Male, age 80, both hemispheres 368.2
2184 Male, age 76, both hemispheres 357.5
Locus coeruleus
nTPM: 366.3
2014 Male, age 55, unknown 375.9
2720 Male, age 74, both hemispheres 375.9
2162 Male, age 80, both hemispheres 365.5
2317 Female, age 72, unknown 364.4
2123 Female, age 91, both hemispheres 362.6
1980 Male, age 76, both hemispheres 361.0
2788 Male, age 74, unknown 358.8
Medial olivary nucleus
nTPM: 375.8
1943 Male, age 61, both hemispheres 385.3
1962 Male, age 76, both hemispheres 377.2
2851 Male, age 80, both hemispheres 373.3
2138 Female, age 91, both hemispheres 367.6
Medial parabrachial nucleus
nTPM: 363.7
2170 Female, age 91, both hemispheres 375.0
2854 Male, age 80, both hemispheres 370.7
2156 Male, age 61, both hemispheres 364.7
2786 Male, age 76, both hemispheres 358.6
2463 Female, age 85, right hemisphere 349.6
Medial periolivary nuclei
nTPM: 350.6
2791 Male, age 74, right hemisphere 358.7
2171 Female, age 85, both hemispheres 351.0
2081 Male, age 80, both hemispheres 349.3
2063 Male, age 76, both hemispheres 348.7
2458 Female, age 91, both hemispheres 345.5
Motor facial nucleus
nTPM: 349.7
2365 Male, age 74, right hemisphere 355.4
2126 Male, age 61, both hemispheres 353.9
2697 Female, age 85, both hemispheres 352.5
2062 Male, age 76, both hemispheres 348.9
2795 Female, age 91, both hemispheres 347.6
2327 Male, age 80, both hemispheres 340.2
Motor trigeminal nucleus
nTPM: 351.1
2335 Male, age 61, both hemispheres 363.5
2309 Male, age 76, both hemispheres 351.1
2560 Male, age 74, both hemispheres 349.2
2321 Female, age 91, both hemispheres 348.4
2079 Male, age 80, both hemispheres 343.2
Nuclei of the trapezoid body
nTPM: 346.9
1983 Male, age 76, both hemispheres 350.7
2166 Male, age 80, both hemispheres 348.6
2735 Female, age 85, both hemispheres 347.9
2159 Male, age 61, both hemispheres 347.1
2368 Female, age 91, both hemispheres 340.3
Paramedian reticular nucleus
nTPM: 363.6
2050 Female, age 85, both hemispheres 370.1
2052 Male, age 76, both hemispheres 368.1
2313 Male, age 61, both hemispheres 360.7
2057 Male, age 80, both hemispheres 355.3
Pontine nuclei
nTPM: 348.7
2319 Female, age 91, both hemispheres 357.9
1863 Male, age 55, unknown 352.8
2115 Male, age 80, left hemisphere 351.6
2454 Male, age 74, left hemisphere 348.9
2109 Female, age 72, unknown 347.9
2787 Female, age 85, both hemispheres 346.9
2727 Male, age 61, right hemisphere 342.0
1968 Male, age 76, left hemisphere 341.2
Pontine raphe nucleus
nTPM: 357.7
2853 Male, age 76, midline 362.1
2122 Female, age 85, midline 353.3
Posteroventral cochlear nucleus
nTPM: 362.9
2341 Male, age 80, both hemispheres 372.0
2371 Male, age 61, both hemispheres 367.8
2752 Female, age 85, both hemispheres 360.0
2135 Female, age 91, both hemispheres 357.9
2070 Male, age 76, both hemispheres 356.7
Principal sensory trigeminal nucleus
nTPM: 351.0
2324 Male, age 76, both hemispheres 358.2
2367 Female, age 91, left hemisphere 352.4
2158 Male, age 61, both hemispheres 350.3
2008 Male, age 80, left hemisphere 343.3
Reticular pontine nucleus, caudal
nTPM: 346.8
2092 Male, age 76, both hemispheres 355.7
2559 Male, age 74, both hemispheres 352.8
2457 Female, age 91, both hemispheres 341.5
2332 Male, age 80, right hemisphere 337.0
Reticular pontine nucleus, oral
nTPM: 358.3
1939 Male, age 80, both hemispheres 366.2
2167 Male, age 76, both hemispheres 365.8
2012 Female, age 85, both hemispheres 356.8
2361 Male, age 74, both hemispheres 351.7
2366 Female, age 91, both hemispheres 350.9
Reticulotegmental nucleus
nTPM: 352.1
2452 Male, age 74, both hemispheres 355.5
2333 Male, age 80, both hemispheres 353.4
2325 Male, age 76, both hemispheres 351.5
2322 Female, age 91, both hemispheres 348.2
Spinal trigeminal nucleus, oral
nTPM: 351.4
2164 Male, age 80, both hemispheres 352.8
2737 Female, age 85, both hemispheres 351.6
1978 Male, age 76, both hemispheres 349.9
Subcoeruleus area
nTPM: 360.9
2369 Female, age 85, left hemisphere 369.3
2323 Female, age 91, left hemisphere 365.9
2451 Male, age 74, both hemispheres 363.2
1958 Male, age 80, both hemispheres 360.4
2089 Male, age 76, left hemisphere 345.8
Superior olive
nTPM: 352.1
2364 Male, age 74, right hemisphere 363.1
2020 Male, age 76, both hemispheres 359.2
2561 Female, age 91, both hemispheres 347.9
1875 Female, age 85, both hemispheres 345.4
2329 Male, age 80, right hemisphere 344.7
Superior vestibular nucleus
nTPM: 366.6
2383 Male, age 74, both hemispheres 376.4
2015 Male, age 80, both hemispheres 365.4
2061 Male, age 76, both hemispheres 358.1
Ventral periolivary nuclei
nTPM: 353.5
2023 Male, age 76, both hemispheres 361.2
2130 Female, age 85, both hemispheres 353.5
2165 Male, age 80, both hemispheres 351.6
2794 Female, age 91, left hemisphere 347.9
Ventrolateral tegmental area, A5 NE cell group
nTPM: 355.8
2359 Male, age 61, both hemispheres 374.4
2840 Female, age 85, both hemispheres 357.6
2161 Male, age 80, both hemispheres 355.4
1959 Male, age 76, both hemispheres 352.8
2456 Female, age 91, both hemispheres 348.1
2449 Male, age 74, both hemispheres 346.4

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 316.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 316.2
FF:10182-103D2 60 years, female 381.8
FF:10165-103B3 76 years, female 250.5
Pons
Scaled Tags Per Million: 206.3
FF:10033-101E6 18-54 years, mixed 206.3

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 0.5
631702 Antisense, RP_040907_01_A02, Mouse strain C57BL/6J (56 days, male) 0.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.