MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:3568.2 nTPM
HPA:3568.2 nTPM
GTEx:2922.6 nTPM
FANTOM5:86.8 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 3568.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3462.1
2586 Male, age 75, left hemisphere 3579.8
2666 Male, age 74, left hemisphere 3561.4
1870 Female, age 42, unknown 3539.8
2411 Female, age 72, unknown 3476.1
1827 Male, age 72, unknown 3444.9
1833 Male, age 53, unknown 3442.0
2828 Female, age 72, unknown 3420.8
2219 Male, age 76, both hemispheres 3403.5
1830 Male, age 51, unknown 3395.1
2019 Male, age 18, unknown 3357.4
Dorsal raphe nucleus
nTPM: 3459.2
2016 Female, age 72, unknown 3508.8
2298 Female, age 72, unknown 3508.4
1828 Male, age 53, unknown 3444.8
2047 Male, age 72, unknown 3420.5
2750 Male, age 76, both hemispheres 3413.3
Inferior colliculus
nTPM: 3488.7
2849 Male, age 72, unknown 3558.8
1890 Male, age 53, unknown 3525.1
2097 Female, age 72, unknown 3456.3
1848 Female, age 42, unknown 3414.5
Median raphe nucleus
nTPM: 3457.6
2220 Male, age 76, midline 3457.6
Pedunculopontine tegmental nucleus
nTPM: 3568.2
2338 Male, age 61, both hemispheres 3684.4
2334 Male, age 80, both hemispheres 3595.8
1921 Female, age 85, both hemispheres 3424.5
Periaquaductal grey, anterior
nTPM: 3443.3
2502 Female, age 75, unknown 3472.7
1947 Male, age 18, unknown 3429.0
1795 Male, age 51, unknown 3428.4
Periaquaductal grey, dorsal
nTPM: 3544.1
2850 Male, age 76, both hemispheres 3638.9
1840 Male, age 53, unknown 3601.7
1831 Male, age 72, unknown 3485.8
2464 Female, age 72, unknown 3449.9
Periaquaductal grey, lateral
nTPM: 3453.0
2053 Male, age 18, unknown 3519.0
2140 Male, age 76, both hemispheres 3502.2
2272 Male, age 74, both hemispheres 3337.8
Pretectal area
nTPM: 3435.8
2825 Male, age 18, unknown 3522.1
2316 Male, age 76, right hemisphere 3484.2
2224 Female, age 72, unknown 3474.9
1817 Female, age 42, unknown 3467.4
1816 Male, age 51, unknown 3459.4
2667 Female, age 75, unknown 3448.1
1815 Male, age 53, unknown 3442.2
2007 Male, age 72, unknown 3437.6
1944 Female, age 72, unknown 3367.4
2407 Male, age 75, both hemispheres 3365.8
2273 Male, age 74, both hemispheres 3324.4
Red nucleus
nTPM: 3493.9
2503 Female, age 72, unknown 3607.1
1821 Female, age 72, unknown 3587.0
1865 Male, age 51, unknown 3521.8
2769 Male, age 72, unknown 3510.6
2725 Female, age 75, unknown 3509.1
2227 Male, age 72, unknown 3503.6
1904 Male, age 53, unknown 3499.1
2588 Male, age 74, left hemisphere 3485.5
1954 Female, age 42, unknown 3453.9
2584 Male, age 75, left hemisphere 3452.6
2785 Male, age 18, unknown 3411.1
2823 Male, age 76, right hemisphere 3385.5
Substantia nigra
nTPM: 3547.8
2699 Male, age 18, unknown 3782.1
1851 Male, age 51, unknown 3712.8
2665 Male, age 74, both hemispheres 3658.4
2409 Female, age 72, unknown 3550.4
1916 Female, age 42, unknown 3524.1
1889 Female, age 72, unknown 3476.7
2241 Male, age 72, unknown 3468.0
2583 Male, age 75, right hemisphere 3457.6
2590 Female, age 75, unknown 3445.5
1941 Male, age 53, unknown 3402.3
Superior colliculus
nTPM: 3479.4
2587 Male, age 74, left hemisphere 3560.4
1995 Male, age 72, unknown 3538.2
1913 Female, age 42, unknown 3537.3
2664 Male, age 75, both hemispheres 3498.8
2668 Female, age 75, unknown 3496.5
1796 Male, age 53, unknown 3494.2
1895 Male, age 76, right hemisphere 3454.7
1839 Male, age 51, unknown 3450.0
2087 Female, age 72, unknown 3400.5
2261 Male, age 18, unknown 3363.5
Ventral tegmental area
nTPM: 3536.6
1915 Female, age 42, unknown 3633.9
2021 Male, age 53, unknown 3574.3
2223 Female, age 72, unknown 3563.2
2410 Female, age 72, unknown 3533.8
2218 Male, age 76, both hemispheres 3467.8
1942 Male, age 51, unknown 3446.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2922.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2922.6
Samples: 139

Max nTPM: 6902.3
Min nTPM: 1130.1
Std nTPM: 1092.3
Median nTPM: 2689.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 6902.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 6486.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 6449.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 6239.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 5999.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 5764.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 5518.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 5083.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 4844.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 4826.2
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 4465.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 86.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.8
FF:10158-103A5 76 years, female 86.8

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The Human Protein Atlas

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