BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:33.9 nTPM
HPA:33.9 nTPM
GTEx:26.8 nTPM
FANTOM5:204.3 Scaled Tags Per Million
Pig:104.8 nTPM
Mouse:407.9 nTPM
Allen mouse:22.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 33.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 32.3
2481 Female, age 94, left hemisphere 35.6
2288 Male, age 75, left hemisphere 33.0
1781 Male, age 74, unknown 32.8
2846 Female, age 79, unknown 32.7
1854 Male, age 80, left hemisphere 32.2
2290 Female, age 72, unknown 31.3
1857 Female, age 85, left hemisphere 31.0
2289 Male, age 61, right hemisphere 30.3
Claustrum
nTPM: 32.1
2196 Female, age 79, unknown 34.9
2198 Male, age 80, both hemispheres 33.4
1956 Male, age 74, unknown 32.6
2568 Male, age 61, both hemispheres 32.4
2392 Female, age 94, both hemispheres 31.7
2292 Female, age 85, both hemispheres 31.6
2491 Male, age 75, both hemispheres 31.6
2284 Female, age 91, both hemispheres 30.6
2645 Female, age 72, unknown 30.0
Globus pallidus, externus
nTPM: 33.2
2395 Male, age 75, both hemispheres 34.8
2772 Female, age 79, unknown 34.8
1996 Male, age 80, right hemisphere 34.7
2646 Male, age 61, right hemisphere 32.7
2567 Female, age 72, unknown 29.2
Globus pallidus, internus
nTPM: 33.7
2287 Male, age 75, right hemisphere 36.8
2483 Female, age 94, right hemisphere 34.9
2778 Female, age 91, both hemispheres 34.4
2037 Male, age 80, right hemisphere 34.2
1818 Male, age 74, unknown 32.4
2111 Female, age 85, right hemisphere 31.9
2566 Female, age 72, unknown 31.3
Nucleus accumbens
nTPM: 33.0
2391 Female, age 94, left hemisphere 35.6
2698 Female, age 72, unknown 34.9
1856 Female, age 91, right hemisphere 33.5
2286 Male, age 75, left hemisphere 33.3
2732 Male, age 80, right hemisphere 32.3
1783 Male, age 74, unknown 32.2
1806 Female, age 85, left hemisphere 32.1
2824 Male, age 61, right hemisphere 30.2
Nucleus basalis of Meynert
nTPM: 32.0
2821 Male, age 75, both hemispheres 33.7
2569 Male, age 61, both hemispheres 31.8
2393 Male, age 80, right hemisphere 31.2
2484 Female, age 94, left hemisphere 31.2
Nucleus of the diagonal band
nTPM: 33.9
1979 Male, age 74, unknown 35.7
1812 Female, age 91, both hemispheres 34.9
2195 Female, age 85, both hemispheres 33.0
2029 Male, age 61, right hemisphere 32.9
2775 Male, age 80, right hemisphere 32.9
Olfactory tubercle
nTPM: 32.5
1846 Male, age 80, right hemisphere 34.6
1998 Female, age 91, both hemispheres 32.2
2856 Male, age 75, right hemisphere 32.2
2487 Female, age 94, left hemisphere 31.1
Putamen
nTPM: 31.5
2482 Female, age 94, left hemisphere 35.3
1937 Female, age 91, right hemisphere 31.5
1838 Male, age 80, right hemisphere 31.4
2466 Female, age 79, unknown 31.3
1829 Male, age 74, unknown 30.7
2647 Male, age 75, left hemisphere 30.5
2489 Female, age 72, unknown 29.6
Septal nuclei
nTPM: 33.7
2629 Female, age 94, right hemisphere 35.3
2199 Male, age 80, right hemisphere 34.8
1960 Male, age 74, unknown 34.6
2009 Female, age 91, both hemispheres 34.0
2031 Female, age 72, unknown 33.9
2059 Female, age 85, both hemispheres 31.8
2394 Male, age 61, left hemisphere 31.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 26.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 26.7
Samples: 246

Max nTPM: 61.0
Min nTPM: 13.3
Std nTPM: 6.5
Median nTPM: 25.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 61.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 52.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 47.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 46.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 45.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 45.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 45.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 41.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 40.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 39.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 38.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 26.8
Samples: 246

Max nTPM: 54.9
Min nTPM: 12.4
Std nTPM: 6.8
Median nTPM: 26.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 54.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 52.9
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 49.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 47.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 42.6
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 40.8
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 40.2
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 40.2
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 39.7
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 39.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 39.1
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Brain - Putamen (basal ganglia)
Average nTPM: 25.9
Samples: 205

Max nTPM: 46.5
Min nTPM: 12.1
Std nTPM: 5.5
Median nTPM: 24.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 46.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 45.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 41.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 40.5
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 40.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 38.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 37.0
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 36.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 36.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 35.4
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 35.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 204.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 169.5
FF:10164-103B2 76 years, female 169.5
Globus pallidus
Scaled Tags Per Million: 204.3
FF:10175-103C4 60 years, female 240.7
FF:10161-103A8 76 years, female 168.0
Nucleus accumbens
Scaled Tags Per Million: 129.9
FF:10037-101F1 23-56 years, mixed 129.9
Putamen
Scaled Tags Per Million: 152.5
FF:10176-103C5 60 years, female 152.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 104.8
Pig sample Sample description nTPM
Caudate
nTPM: 77.7
Samples: 4

Max nTPM: 84.0
Min nTPM: 70.5
Sample A Female 77.7
Sample B Female 78.5
Sample C Male 84.0
Sample D Male 70.5
Putamen
nTPM: 104.8
Samples: 4

Max nTPM: 121.9
Min nTPM: 73.1
Sample A Female 121.9
Sample B Female 73.1
Sample C Male 120.6
Sample D Male 103.5
Septum
nTPM: 103.3
Samples: 4

Max nTPM: 128.7
Min nTPM: 84.3
Sample A Female 97.3
Sample B Female 84.3
Sample C Male 128.7
Sample D Male 103.0
Ventral pallidum
nTPM: 92.5
Samples: 4

Max nTPM: 128.7
Min nTPM: 69.5
Sample A Female 69.5
Sample B Female 84.3
Sample C Male 128.7
Sample D Male 87.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 407.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 401.4
Samples: 4

Max nTPM: 433.7
Min nTPM: 371.8
Sample A Male 376.5
Sample B Male 371.8
Sample C Female 433.7
Sample D Female 423.5
Septum
nTPM: 405.1
Samples: 4

Max nTPM: 435.1
Min nTPM: 372.7
Sample A Male 372.7
Sample B Male 435.1
Sample C Female 417.8
Sample D Female 394.8
Ventral forebrain
nTPM: 407.9
Samples: 4

Max nTPM: 438.1
Min nTPM: 366.4
Sample A Male 397.7
Sample B Male 366.4
Sample C Female 429.4
Sample D Female 438.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 22.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 22.2
72734 Antisense, RP_040407_01_B06, Mouse strain C57BL/6J (56 days, male) 24.1
74581381 Antisense, RP_051214_01_C06, Mouse strain C57BL/6J (56 days, male) 20.4
Pallidum
Expression energy: 19.7
72734 Antisense, RP_040407_01_B06, Mouse strain C57BL/6J (56 days, male) 22.3
74581381 Antisense, RP_051214_01_C06, Mouse strain C57BL/6J (56 days, male) 17.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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