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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:132.7 nTPM
HPA:132.7 nTPM
GTEx:68.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 132.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 128.6
2816 Male, age 47, midline 133.4
2194 Female, age 79, both hemispheres 131.0
2565 Male, age 75, midline 128.2
2048 Male, age 55, midline 127.4
1981 Female, age 72, midline 123.2
Cervical spinal cord, dorsal horn
nTPM: 132.7
2721 Male, age 90, both hemispheres 163.7
2297 Male, age 75, both hemispheres 139.2
1877 Male, age 55, unknown 129.9
2296 Male, age 66, both hemispheres 121.9
2069 Male, age 47, both hemispheres 121.3
2173 Female, age 72, unknown 120.3
Cervical spinal cord, ventral horn
nTPM: 130.1
2820 Female, age 79, both hemispheres 150.3
2068 Male, age 55, unknown 134.2
2295 Male, age 66, both hemispheres 129.4
2480 Male, age 75, both hemispheres 123.4
2809 Male, age 90, both hemispheres 122.8
2098 Female, age 72, unknown 120.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 68.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 68.3
Samples: 159

Max nTPM: 288.7
Min nTPM: 6.8
Std nTPM: 44.6
Median nTPM: 57.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 288.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 263.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 183.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 175.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 162.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 159.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 155.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 154.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 152.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 151.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 151.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 143.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 135.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 129.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 128.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 128.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 126.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 119.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 118.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 117.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 116.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 116.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 110.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 108.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 107.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 106.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 106.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 104.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 99.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 99.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 98.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 97.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 95.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 95.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 95.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 89.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 89.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 88.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 87.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 85.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 85.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 84.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 83.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 83.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 83.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 81.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 81.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 81.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 79.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 79.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 78.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 78.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 77.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 76.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 75.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 75.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 74.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 74.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 74.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 72.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 72.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 71.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 67.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 67.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 66.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 66.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 66.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 64.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 64.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 64.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 64.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 63.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 62.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 60.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 60.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 60.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 59.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 59.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 57.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 57.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 57.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 57.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 56.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 56.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 56.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 55.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 52.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 52.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 52.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 51.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 51.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 51.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 51.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 51.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 51.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 50.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 50.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 50.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 49.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 48.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 48.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 48.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 47.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 46.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 45.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 44.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 43.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 43.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 42.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 41.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 41.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 41.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 40.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 40.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 40.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 39.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 38.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 37.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 36.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 36.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 36.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 36.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 36.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 35.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 35.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 34.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 34.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 33.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 33.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 33.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 32.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 32.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 29.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 28.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 27.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 27.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 27.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 25.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 25.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 24.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 24.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 22.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 22.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 21.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 20.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 20.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 20.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 20.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 19.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 19.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 18.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 18.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 18.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 17.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 13.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 10.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 8.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 8.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 6.8
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