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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:178.3 nTPM
HPA:178.3 nTPM
GTEx:82.4 nTPM
FANTOM5:16.5 Scaled Tags Per Million
Pig:27.7 nTPM
Mouse:214.9 nTPM
Allen mouse:0.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 178.3
Sample id Sample description nTPM
Amygdala
nTPM: 178.3
2514 Male, age 75, right hemisphere 187.9
2695 Female, age 67, right hemisphere 183.1
1987 Female, age 91, left hemisphere 181.8
2517 Female, age 94, left hemisphere 169.5
2814 Male, age 76, right hemisphere 169.2
Basal amygdala
nTPM: 166.6
2110 Male, age 80, left hemisphere 172.3
2243 Female, age 91, right hemisphere 170.9
1955 Male, age 76, both hemispheres 170.6
2609 Male, age 75, right hemisphere 166.7
2685 Female, age 94, left hemisphere 162.8
2827 Female, age 67, right hemisphere 156.3
Central amygdala
nTPM: 168.8
2826 Female, age 94, left hemisphere 179.5
2515 Male, age 75, right hemisphere 173.8
1905 Male, age 76, both hemispheres 166.3
2239 Male, age 80, left hemisphere 164.6
2701 Female, age 91, right hemisphere 159.9
Corticomedial amygdala
nTPM: 168.5
2428 Male, age 75, right hemisphere 182.1
2242 Female, age 91, right hemisphere 169.1
2829 Male, age 80, left hemisphere 168.6
2240 Male, age 76, both hemispheres 168.4
2429 Female, age 94, left hemisphere 162.3
2535 Female, age 67, right hemisphere 160.6
Lateral amygdala
nTPM: 170.2
2534 Female, age 94, left hemisphere 181.0
2256 Male, age 80, left hemisphere 177.5
2255 Female, age 91, right hemisphere 168.5
2830 Female, age 67, right hemisphere 167.2
2516 Male, age 75, right hemisphere 166.2
1883 Male, age 76, both hemispheres 160.9
Stria terminalis, bed nucleus
nTPM: 166.8
2201 Male, age 74, unknown 169.2
1974 Female, age 91, both hemispheres 167.6
2486 Female, age 94, both hemispheres 163.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 82.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 82.4
Samples: 152

Max nTPM: 241.5
Min nTPM: 27.9
Std nTPM: 30.1
Median nTPM: 78.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 241.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 186.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 166.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 163.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 154.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 145.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 137.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 134.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 133.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 123.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 122.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 122.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 122.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 119.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 117.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 117.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 116.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 114.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 114.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 113.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 113.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 108.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 108.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 108.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 107.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 106.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 106.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 104.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 104.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 104.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 103.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 102.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 102.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 100.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 100.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 99.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 97.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 96.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 96.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 95.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 95.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 94.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 93.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 93.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 91.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 91.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 89.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 89.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 89.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 88.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 88.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 88.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 87.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 86.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 85.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 85.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 84.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 83.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 83.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 82.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 82.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 82.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 82.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 82.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 81.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 81.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 81.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 81.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 80.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 80.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 79.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 79.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 79.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 79.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 79.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 78.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 78.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 78.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 77.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 77.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 77.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 77.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 76.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 76.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 76.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 75.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 75.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 74.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 73.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 72.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 72.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 72.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 72.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 71.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 71.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 70.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 70.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 70.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 69.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 69.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 68.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 66.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 66.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 66.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 65.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 65.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 65.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 65.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 63.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 63.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 63.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 63.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 63.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 63.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 62.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 62.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 62.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 61.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 61.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 61.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 60.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 60.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 59.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 57.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 56.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 56.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 56.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 55.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 54.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 53.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 53.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 52.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 51.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 51.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 49.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 49.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 49.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 48.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 48.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 48.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 47.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 46.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 45.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 44.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 44.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 43.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 43.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 41.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 38.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 34.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 34.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 27.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 16.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 16.5
FF:10151-102I7 76 years, female 16.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 27.7
Pig sample Sample description nTPM
Amygdala
nTPM: 27.7
Samples: 4

Max nTPM: 33.3
Min nTPM: 19.9
Sample A Female 33.3
Sample B Female 27.2
Sample C Male 30.3
Sample D Male 19.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 214.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 214.9
Samples: 4

Max nTPM: 230.0
Min nTPM: 189.6
Sample A Male 189.6
Sample B Male 222.4
Sample C Female 230.0
Sample D Female 217.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.2
74003380 Antisense, RP_051130_01_E06, Mouse strain C57BL/6J (56 days, male) 0.2

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