MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:213.0 nTPM
HPA:213.0 nTPM
GTEx:101.9 nTPM
FANTOM5:12.6 Scaled Tags Per Million
Pig:87.8 nTPM
Mouse:167.5 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 213.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 175.3
2666 Male, age 74, left hemisphere 191.8
2411 Female, age 72, unknown 185.3
2828 Female, age 72, unknown 184.9
2586 Male, age 75, left hemisphere 181.2
1833 Male, age 53, unknown 178.6
1830 Male, age 51, unknown 174.6
1870 Female, age 42, unknown 174.3
1827 Male, age 72, unknown 170.2
2219 Male, age 76, both hemispheres 166.6
2019 Male, age 18, unknown 145.1
Dorsal raphe nucleus
nTPM: 200.5
2298 Female, age 72, unknown 214.5
2047 Male, age 72, unknown 209.1
1828 Male, age 53, unknown 200.6
2750 Male, age 76, both hemispheres 192.1
2016 Female, age 72, unknown 186.1
Inferior colliculus
nTPM: 168.2
2097 Female, age 72, unknown 177.0
1890 Male, age 53, unknown 171.4
1848 Female, age 42, unknown 163.6
2849 Male, age 72, unknown 160.9
Median raphe nucleus
nTPM: 198.3
2220 Male, age 76, midline 198.3
Pedunculopontine tegmental nucleus
nTPM: 193.4
2338 Male, age 61, both hemispheres 230.8
2334 Male, age 80, both hemispheres 185.8
1921 Female, age 85, both hemispheres 163.5
Periaquaductal grey, anterior
nTPM: 213.0
1947 Male, age 18, unknown 242.2
1795 Male, age 51, unknown 211.7
2502 Female, age 75, unknown 185.1
Periaquaductal grey, dorsal
nTPM: 179.6
1831 Male, age 72, unknown 187.4
2850 Male, age 76, both hemispheres 182.6
1840 Male, age 53, unknown 178.6
2464 Female, age 72, unknown 169.9
Periaquaductal grey, lateral
nTPM: 189.4
2272 Male, age 74, both hemispheres 195.9
2053 Male, age 18, unknown 193.0
2140 Male, age 76, both hemispheres 179.2
Pretectal area
nTPM: 170.8
2825 Male, age 18, unknown 201.7
2224 Female, age 72, unknown 186.6
2273 Male, age 74, both hemispheres 185.6
2316 Male, age 76, right hemisphere 172.9
2667 Female, age 75, unknown 167.8
1817 Female, age 42, unknown 166.3
1944 Female, age 72, unknown 163.9
2407 Male, age 75, both hemispheres 163.4
1815 Male, age 53, unknown 160.7
2007 Male, age 72, unknown 155.5
1816 Male, age 51, unknown 154.5
Red nucleus
nTPM: 182.6
2725 Female, age 75, unknown 205.2
2503 Female, age 72, unknown 203.5
2227 Male, age 72, unknown 193.5
2769 Male, age 72, unknown 192.7
1865 Male, age 51, unknown 187.3
1904 Male, age 53, unknown 185.2
1954 Female, age 42, unknown 184.2
1821 Female, age 72, unknown 180.4
2584 Male, age 75, left hemisphere 175.7
2823 Male, age 76, right hemisphere 175.1
2588 Male, age 74, left hemisphere 159.5
2785 Male, age 18, unknown 148.3
Substantia nigra
nTPM: 209.7
2699 Male, age 18, unknown 234.3
1916 Female, age 42, unknown 230.1
1851 Male, age 51, unknown 227.6
2665 Male, age 74, both hemispheres 224.2
2590 Female, age 75, unknown 213.6
2583 Male, age 75, right hemisphere 199.8
2241 Male, age 72, unknown 198.8
2409 Female, age 72, unknown 197.4
1941 Male, age 53, unknown 193.5
1889 Female, age 72, unknown 177.1
Superior colliculus
nTPM: 174.0
2261 Male, age 18, unknown 189.2
2587 Male, age 74, left hemisphere 185.0
1796 Male, age 53, unknown 181.5
1995 Male, age 72, unknown 174.2
1839 Male, age 51, unknown 172.6
2087 Female, age 72, unknown 172.5
2668 Female, age 75, unknown 170.8
1913 Female, age 42, unknown 169.6
2664 Male, age 75, both hemispheres 168.6
1895 Male, age 76, right hemisphere 155.9
Ventral tegmental area
nTPM: 207.8
1915 Female, age 42, unknown 227.4
2410 Female, age 72, unknown 210.6
1942 Male, age 51, unknown 207.2
2021 Male, age 53, unknown 207.0
2218 Male, age 76, both hemispheres 197.3
2223 Female, age 72, unknown 197.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 101.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 101.9
Samples: 139

Max nTPM: 253.3
Min nTPM: 39.4
Std nTPM: 35.5
Median nTPM: 94.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 253.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 202.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 195.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 183.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 179.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 170.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 169.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 162.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 160.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 156.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 154.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.6
FF:10158-103A5 76 years, female 12.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 87.8
Pig sample Sample description nTPM
Midbrain
nTPM: 70.1
Samples: 4

Max nTPM: 102.5
Min nTPM: 48.1
Sample A Female 102.5
Sample B Female 79.3
Sample C Male 48.1
Sample D Male 50.3
Periaqueductal gray
nTPM: 77.2
Samples: 3

Max nTPM: 102.9
Min nTPM: 61.4
Sample B Female 61.4
Sample C Male 102.9
Sample D Male 67.2
Substantia nigra
nTPM: 87.8
Samples: 4

Max nTPM: 117.9
Min nTPM: 53.5
Sample A Female 117.9
Sample B Female 78.4
Sample C Male 101.4
Sample D Male 53.5
Superior colliculi
nTPM: 61.5
Samples: 4

Max nTPM: 74.6
Min nTPM: 46.1
Sample A Female 74.6
Sample B Female 66.3
Sample C Male 46.1
Sample D Male 59.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 167.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 167.5
Samples: 4

Max nTPM: 188.4
Min nTPM: 154.6
Sample A Male 188.4
Sample B Male 157.9
Sample C Female 154.6
Sample D Female 168.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
74003380 Antisense, RP_051130_01_E06, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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