BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:6.1 nTPM
HPA:6.1 nTPM
GTEx:5.5 nTPM
FANTOM5:14.3 Scaled Tags Per Million
Pig:5.1 nTPM
Mouse:3.4 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 6.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.8
2289 Male, age 61, right hemisphere 5.7
1781 Male, age 74, unknown 5.3
2288 Male, age 75, left hemisphere 5.2
2846 Female, age 79, unknown 4.8
2290 Female, age 72, unknown 4.7
1854 Male, age 80, left hemisphere 4.6
1857 Female, age 85, left hemisphere 4.6
2481 Female, age 94, left hemisphere 3.8
Claustrum
nTPM: 6.1
2645 Female, age 72, unknown 7.8
2568 Male, age 61, both hemispheres 7.4
2491 Male, age 75, both hemispheres 6.6
2284 Female, age 91, both hemispheres 6.3
2198 Male, age 80, both hemispheres 5.8
2392 Female, age 94, both hemispheres 5.6
2292 Female, age 85, both hemispheres 5.4
2196 Female, age 79, unknown 5.3
1956 Male, age 74, unknown 5.1
Globus pallidus, externus
nTPM: 4.9
2567 Female, age 72, unknown 6.3
2646 Male, age 61, right hemisphere 5.3
2395 Male, age 75, both hemispheres 4.5
2772 Female, age 79, unknown 4.4
1996 Male, age 80, right hemisphere 3.8
Globus pallidus, internus
nTPM: 4.9
2566 Female, age 72, unknown 5.8
2111 Female, age 85, right hemisphere 5.5
2778 Female, age 91, both hemispheres 5.5
2483 Female, age 94, right hemisphere 4.5
2287 Male, age 75, right hemisphere 4.4
1818 Male, age 74, unknown 4.3
2037 Male, age 80, right hemisphere 4.2
Nucleus accumbens
nTPM: 5.1
2824 Male, age 61, right hemisphere 5.9
1783 Male, age 74, unknown 5.7
1806 Female, age 85, left hemisphere 5.2
2391 Female, age 94, left hemisphere 5.2
2732 Male, age 80, right hemisphere 5.1
2286 Male, age 75, left hemisphere 4.9
1856 Female, age 91, right hemisphere 4.7
2698 Female, age 72, unknown 4.4
Nucleus basalis of Meynert
nTPM: 5.3
2484 Female, age 94, left hemisphere 5.7
2569 Male, age 61, both hemispheres 5.3
2393 Male, age 80, right hemisphere 5.2
2821 Male, age 75, both hemispheres 5.1
Nucleus of the diagonal band
nTPM: 5.4
2029 Male, age 61, right hemisphere 6.3
2195 Female, age 85, both hemispheres 5.7
1979 Male, age 74, unknown 5.5
2775 Male, age 80, right hemisphere 5.5
1812 Female, age 91, both hemispheres 4.2
Olfactory tubercle
nTPM: 5.5
1998 Female, age 91, both hemispheres 5.9
2487 Female, age 94, left hemisphere 5.8
2856 Male, age 75, right hemisphere 5.4
1846 Male, age 80, right hemisphere 4.7
Putamen
nTPM: 5.5
2489 Female, age 72, unknown 6.5
2647 Male, age 75, left hemisphere 6.4
2466 Female, age 79, unknown 6.0
1838 Male, age 80, right hemisphere 5.3
1937 Female, age 91, right hemisphere 4.9
1829 Male, age 74, unknown 4.8
2482 Female, age 94, left hemisphere 4.4
Septal nuclei
nTPM: 5.3
2059 Female, age 85, both hemispheres 6.9
1960 Male, age 74, unknown 5.6
2031 Female, age 72, unknown 5.3
2009 Female, age 91, both hemispheres 5.0
2199 Male, age 80, right hemisphere 5.0
2394 Male, age 61, left hemisphere 5.0
2629 Female, age 94, right hemisphere 4.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 5.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 5.4
Samples: 246

Max nTPM: 9.2
Min nTPM: 2.6
Std nTPM: 1.0
Median nTPM: 5.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 9.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 8.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 7.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 7.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 7.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 7.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 7.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 7.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 7.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 7.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 7.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 5.4
Samples: 246

Max nTPM: 9.1
Min nTPM: 2.8
Std nTPM: 1.0
Median nTPM: 5.4
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 9.1
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 8.9
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 8.3
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 8.3
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 7.9
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 7.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 7.6
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 7.5
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 7.5
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 7.5
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 7.5
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Brain - Putamen (basal ganglia)
Average nTPM: 5.5
Samples: 205

Max nTPM: 8.1
Min nTPM: 2.1
Std nTPM: 1.0
Median nTPM: 5.6
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 8.1
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 8.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 8.0
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 7.8
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 7.6
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 7.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 7.5
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 7.5
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 7.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 7.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 7.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 14.3
FF:10164-103B2 76 years, female 14.3
Globus pallidus
Scaled Tags Per Million: 11.6
FF:10161-103A8 76 years, female 15.3
FF:10175-103C4 60 years, female 7.8
Nucleus accumbens
Scaled Tags Per Million: 13.3
FF:10037-101F1 23-56 years, mixed 13.3
Putamen
Scaled Tags Per Million: 11.1
FF:10176-103C5 60 years, female 11.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.1
Pig sample Sample description nTPM
Caudate
nTPM: 5.1
Samples: 4

Max nTPM: 6.1
Min nTPM: 3.3
Sample A Female 3.3
Sample B Female 6.1
Sample C Male 5.5
Sample D Male 5.3
Putamen
nTPM: 4.4
Samples: 4

Max nTPM: 4.5
Min nTPM: 4.2
Sample A Female 4.5
Sample B Female 4.5
Sample C Male 4.5
Sample D Male 4.2
Septum
nTPM: 4.3
Samples: 4

Max nTPM: 5.7
Min nTPM: 2.8
Sample A Female 4.4
Sample B Female 4.1
Sample C Male 5.7
Sample D Male 2.8
Ventral pallidum
nTPM: 4.5
Samples: 4

Max nTPM: 5.8
Min nTPM: 3.4
Sample A Female 3.4
Sample B Female 4.6
Sample C Male 5.8
Sample D Male 4.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 3.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.2
Samples: 4

Max nTPM: 3.7
Min nTPM: 3.0
Sample A Male 3.1
Sample B Male 3.1
Sample C Female 3.0
Sample D Female 3.7
Septum
nTPM: 3.5
Samples: 4

Max nTPM: 3.7
Min nTPM: 3.2
Sample A Male 3.7
Sample B Male 3.2
Sample C Female 3.6
Sample D Female 3.3
Ventral forebrain
nTPM: 3.4
Samples: 4

Max nTPM: 3.6
Min nTPM: 3.1
Sample A Male 3.1
Sample B Male 3.6
Sample C Female 3.4
Sample D Female 3.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
68193017 Antisense, RP_041018_01_E03, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
68193017 Antisense, RP_041018_01_E03, Mouse strain C57BL/6J (56 days, male) 0.0

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