BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:13.2 nTPM
HPA:13.2 nTPM
GTEx:15.7 nTPM
FANTOM5:16.0 Scaled Tags Per Million
Pig:16.6 nTPM
Mouse:51.2 nTPM

CAUDATE - Antibody stainingi
Antibody HPA045050
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 13.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.5
1781 Male, age 74, unknown 8.5
2288 Male, age 75, left hemisphere 7.5
2289 Male, age 61, right hemisphere 5.5
1854 Male, age 80, left hemisphere 4.8
2481 Female, age 94, left hemisphere 4.7
2290 Female, age 72, unknown 4.5
1857 Female, age 85, left hemisphere 4.3
2846 Female, age 79, unknown 4.3
Claustrum
nTPM: 7.2
2491 Male, age 75, both hemispheres 10.2
2284 Female, age 91, both hemispheres 8.4
2568 Male, age 61, both hemispheres 7.9
2645 Female, age 72, unknown 7.4
1956 Male, age 74, unknown 6.8
2198 Male, age 80, both hemispheres 6.6
2392 Female, age 94, both hemispheres 6.6
2292 Female, age 85, both hemispheres 5.9
2196 Female, age 79, unknown 5.5
Globus pallidus, externus
nTPM: 13.2
2772 Female, age 79, unknown 24.4
2567 Female, age 72, unknown 16.6
1996 Male, age 80, right hemisphere 10.0
2646 Male, age 61, right hemisphere 8.5
2395 Male, age 75, both hemispheres 6.4
Globus pallidus, internus
nTPM: 9.2
2037 Male, age 80, right hemisphere 14.9
1818 Male, age 74, unknown 14.8
2566 Female, age 72, unknown 11.5
2111 Female, age 85, right hemisphere 7.0
2483 Female, age 94, right hemisphere 6.1
2287 Male, age 75, right hemisphere 5.5
2778 Female, age 91, both hemispheres 4.8
Nucleus accumbens
nTPM: 6.3
1856 Female, age 91, right hemisphere 8.4
2824 Male, age 61, right hemisphere 8.1
2286 Male, age 75, left hemisphere 7.0
1783 Male, age 74, unknown 6.0
2698 Female, age 72, unknown 5.5
2732 Male, age 80, right hemisphere 5.4
1806 Female, age 85, left hemisphere 5.3
2391 Female, age 94, left hemisphere 4.8
Nucleus basalis of Meynert
nTPM: 5.8
2569 Male, age 61, both hemispheres 6.6
2393 Male, age 80, right hemisphere 6.0
2821 Male, age 75, both hemispheres 5.9
2484 Female, age 94, left hemisphere 4.6
Nucleus of the diagonal band
nTPM: 10.2
2775 Male, age 80, right hemisphere 13.3
1812 Female, age 91, both hemispheres 10.9
2029 Male, age 61, right hemisphere 10.6
2195 Female, age 85, both hemispheres 10.1
1979 Male, age 74, unknown 6.1
Olfactory tubercle
nTPM: 12.2
1998 Female, age 91, both hemispheres 15.7
2856 Male, age 75, right hemisphere 12.8
2487 Female, age 94, left hemisphere 11.7
1846 Male, age 80, right hemisphere 8.5
Putamen
nTPM: 5.4
1937 Female, age 91, right hemisphere 6.7
1829 Male, age 74, unknown 6.0
2647 Male, age 75, left hemisphere 6.0
1838 Male, age 80, right hemisphere 5.8
2482 Female, age 94, left hemisphere 5.0
2466 Female, age 79, unknown 4.5
2489 Female, age 72, unknown 4.0
Septal nuclei
nTPM: 9.7
1960 Male, age 74, unknown 11.5
2394 Male, age 61, left hemisphere 11.4
2031 Female, age 72, unknown 10.5
2059 Female, age 85, both hemispheres 10.5
2629 Female, age 94, right hemisphere 10.0
2009 Female, age 91, both hemispheres 9.1
2199 Male, age 80, right hemisphere 4.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 15.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.6
Samples: 246

Max nTPM: 54.2
Min nTPM: 1.2
Std nTPM: 6.0
Median nTPM: 10.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 54.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 35.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 31.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 21.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 21.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 21.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 21.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 21.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 21.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 20.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 20.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 15.7
Samples: 246

Max nTPM: 57.5
Min nTPM: 0.9
Std nTPM: 7.8
Median nTPM: 15.1
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 57.5
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 49.5
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 45.3
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 44.2
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 37.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 35.2
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 34.8
GTEX-13G51-0011-R6b-SM-5LZX4 60-69 years, male 33.8
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 30.5
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 28.7
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 27.8
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Brain - Putamen (basal ganglia)
Average nTPM: 12.4
Samples: 205

Max nTPM: 43.2
Min nTPM: 1.2
Std nTPM: 6.5
Median nTPM: 11.8
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 43.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 31.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 31.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 29.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 28.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 28.2
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 26.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 25.9
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 24.0
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 24.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 23.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 8.2
FF:10164-103B2 76 years, female 8.2
Globus pallidus
Scaled Tags Per Million: 5.5
FF:10175-103C4 60 years, female 7.1
FF:10161-103A8 76 years, female 3.9
Nucleus accumbens
Scaled Tags Per Million: 15.4
FF:10037-101F1 23-56 years, mixed 15.4
Putamen
Scaled Tags Per Million: 16.0
FF:10176-103C5 60 years, female 16.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 16.6
Pig sample Sample description nTPM
Caudate
nTPM: 7.5
Samples: 4

Max nTPM: 8.4
Min nTPM: 6.1
Sample A Female 6.1
Sample B Female 7.5
Sample C Male 8.1
Sample D Male 8.4
Putamen
nTPM: 10.1
Samples: 4

Max nTPM: 13.6
Min nTPM: 6.5
Sample A Female 13.6
Sample B Female 6.5
Sample C Male 12.0
Sample D Male 8.1
Septum
nTPM: 16.6
Samples: 4

Max nTPM: 22.3
Min nTPM: 12.1
Sample A Female 12.1
Sample B Female 12.8
Sample C Male 22.3
Sample D Male 19.3
Ventral pallidum
nTPM: 15.1
Samples: 4

Max nTPM: 32.9
Min nTPM: 7.3
Sample A Female 8.9
Sample B Female 11.3
Sample C Male 32.9
Sample D Male 7.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 51.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 41.0
Samples: 4

Max nTPM: 43.8
Min nTPM: 38.6
Sample A Male 39.8
Sample B Male 38.6
Sample C Female 41.9
Sample D Female 43.8
Septum
nTPM: 32.9
Samples: 4

Max nTPM: 36.6
Min nTPM: 31.1
Sample A Male 36.6
Sample B Male 31.3
Sample C Female 31.1
Sample D Female 32.6
Ventral forebrain
nTPM: 51.2
Samples: 4

Max nTPM: 56.5
Min nTPM: 42.1
Sample A Male 56.2
Sample B Male 42.1
Sample C Female 50.0
Sample D Female 56.5

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The Human Protein Atlas

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