MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:67.1 nTPM
HPA:67.1 nTPM
GTEx:72.1 nTPM
FANTOM5:52.9 Scaled Tags Per Million
Pig:0.5 nTPM
Mouse:0.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 67.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.1
2666 Male, age 74, left hemisphere 68.2
1870 Female, age 42, unknown 66.8
1827 Male, age 72, unknown 65.9
2219 Male, age 76, both hemispheres 63.9
2828 Female, age 72, unknown 63.9
1830 Male, age 51, unknown 63.8
2411 Female, age 72, unknown 63.7
1833 Male, age 53, unknown 63.4
2586 Male, age 75, left hemisphere 61.6
2019 Male, age 18, unknown 60.2
Dorsal raphe nucleus
nTPM: 63.3
1828 Male, age 53, unknown 64.2
2298 Female, age 72, unknown 63.6
2047 Male, age 72, unknown 63.5
2750 Male, age 76, both hemispheres 63.0
2016 Female, age 72, unknown 62.1
Inferior colliculus
nTPM: 64.2
2849 Male, age 72, unknown 65.6
1890 Male, age 53, unknown 64.5
1848 Female, age 42, unknown 63.3
2097 Female, age 72, unknown 63.3
Median raphe nucleus
nTPM: 66.7
2220 Male, age 76, midline 66.7
Pedunculopontine tegmental nucleus
nTPM: 64.3
2334 Male, age 80, both hemispheres 65.6
2338 Male, age 61, both hemispheres 64.9
1921 Female, age 85, both hemispheres 62.3
Periaquaductal grey, anterior
nTPM: 64.4
1947 Male, age 18, unknown 66.9
1795 Male, age 51, unknown 63.2
2502 Female, age 75, unknown 63.1
Periaquaductal grey, dorsal
nTPM: 65.1
2850 Male, age 76, both hemispheres 68.1
1840 Male, age 53, unknown 65.5
1831 Male, age 72, unknown 64.9
2464 Female, age 72, unknown 62.0
Periaquaductal grey, lateral
nTPM: 64.1
2053 Male, age 18, unknown 65.1
2140 Male, age 76, both hemispheres 64.5
2272 Male, age 74, both hemispheres 62.8
Pretectal area
nTPM: 64.2
1816 Male, age 51, unknown 67.2
1944 Female, age 72, unknown 66.6
2825 Male, age 18, unknown 65.5
1817 Female, age 42, unknown 64.8
1815 Male, age 53, unknown 64.6
2007 Male, age 72, unknown 63.8
2273 Male, age 74, both hemispheres 63.8
2667 Female, age 75, unknown 63.6
2224 Female, age 72, unknown 63.5
2407 Male, age 75, both hemispheres 63.0
2316 Male, age 76, right hemisphere 60.0
Red nucleus
nTPM: 64.2
2725 Female, age 75, unknown 69.6
2503 Female, age 72, unknown 65.8
1821 Female, age 72, unknown 65.7
2823 Male, age 76, right hemisphere 65.0
1954 Female, age 42, unknown 64.2
1904 Male, age 53, unknown 64.1
1865 Male, age 51, unknown 64.0
2227 Male, age 72, unknown 62.8
2588 Male, age 74, left hemisphere 62.8
2785 Male, age 18, unknown 62.4
2769 Male, age 72, unknown 62.2
2584 Male, age 75, left hemisphere 62.0
Substantia nigra
nTPM: 67.1
2409 Female, age 72, unknown 74.7
2241 Male, age 72, unknown 69.4
1916 Female, age 42, unknown 68.9
2699 Male, age 18, unknown 67.7
1851 Male, age 51, unknown 67.0
1941 Male, age 53, unknown 66.8
1889 Female, age 72, unknown 66.3
2665 Male, age 74, both hemispheres 64.5
2590 Female, age 75, unknown 63.5
2583 Male, age 75, right hemisphere 62.1
Superior colliculus
nTPM: 63.7
2587 Male, age 74, left hemisphere 65.9
1895 Male, age 76, right hemisphere 65.4
2261 Male, age 18, unknown 64.4
2087 Female, age 72, unknown 64.2
1796 Male, age 53, unknown 63.8
2668 Female, age 75, unknown 63.8
1913 Female, age 42, unknown 63.7
1839 Male, age 51, unknown 62.3
1995 Male, age 72, unknown 62.0
2664 Male, age 75, both hemispheres 61.6
Ventral tegmental area
nTPM: 65.0
2218 Male, age 76, both hemispheres 66.5
1915 Female, age 42, unknown 66.2
2223 Female, age 72, unknown 65.5
1942 Male, age 51, unknown 64.8
2410 Female, age 72, unknown 64.0
2021 Male, age 53, unknown 62.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 72.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.1
Samples: 139

Max nTPM: 149.6
Min nTPM: 38.4
Std nTPM: 16.7
Median nTPM: 70.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 149.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 125.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 111.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 109.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 109.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 106.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 103.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 101.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 98.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 97.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 97.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.9
FF:10158-103A5 76 years, female 52.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.5
Pig sample Sample description nTPM
Midbrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.4
Sample C Male 0.4
Sample D Male 0.4
Periaqueductal gray
nTPM: 0.5
Samples: 3

Max nTPM: 0.6
Min nTPM: 0.5
Sample B Female 0.5
Sample C Male 0.5
Sample D Male 0.6
Substantia nigra
nTPM: 0.5
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.1
Sample A Female 0.7
Sample B Female 0.1
Sample C Male 0.9
Sample D Male 0.1
Superior colliculi
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.0
Sample A Female 0.4
Sample B Female 0.0
Sample C Male 0.3
Sample D Male 0.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.1
Sample C Female 0.0
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69116416 Antisense, RP_050317_02_F04, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.