MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:33.4 nTPM
HPA:33.4 nTPM
GTEx:31.9 nTPM
FANTOM5:67.3 Scaled Tags Per Million
Pig:14.2 nTPM
Mouse:48.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.5
2586 Male, age 75, left hemisphere 35.3
2411 Female, age 72, unknown 33.0
1830 Male, age 51, unknown 31.5
2019 Male, age 18, unknown 30.9
1870 Female, age 42, unknown 29.8
2828 Female, age 72, unknown 29.5
1833 Male, age 53, unknown 29.4
2666 Male, age 74, left hemisphere 29.0
2219 Male, age 76, both hemispheres 28.8
1827 Male, age 72, unknown 28.1
Dorsal raphe nucleus
nTPM: 26.8
2750 Male, age 76, both hemispheres 31.7
2047 Male, age 72, unknown 27.8
1828 Male, age 53, unknown 25.9
2298 Female, age 72, unknown 24.5
2016 Female, age 72, unknown 24.0
Inferior colliculus
nTPM: 25.4
1890 Male, age 53, unknown 26.7
2849 Male, age 72, unknown 25.5
1848 Female, age 42, unknown 25.2
2097 Female, age 72, unknown 24.2
Median raphe nucleus
nTPM: 26.5
2220 Male, age 76, midline 26.5
Pedunculopontine tegmental nucleus
nTPM: 28.0
1921 Female, age 85, both hemispheres 29.5
2334 Male, age 80, both hemispheres 28.4
2338 Male, age 61, both hemispheres 26.1
Periaquaductal grey, anterior
nTPM: 28.0
2502 Female, age 75, unknown 29.7
1795 Male, age 51, unknown 27.3
1947 Male, age 18, unknown 27.0
Periaquaductal grey, dorsal
nTPM: 24.2
2464 Female, age 72, unknown 27.6
1831 Male, age 72, unknown 24.7
1840 Male, age 53, unknown 22.9
2850 Male, age 76, both hemispheres 21.6
Periaquaductal grey, lateral
nTPM: 25.5
2053 Male, age 18, unknown 27.6
2272 Male, age 74, both hemispheres 26.1
2140 Male, age 76, both hemispheres 22.9
Pretectal area
nTPM: 27.6
2407 Male, age 75, both hemispheres 32.7
2316 Male, age 76, right hemisphere 29.9
2667 Female, age 75, unknown 28.9
2007 Male, age 72, unknown 28.4
1815 Male, age 53, unknown 28.2
2825 Male, age 18, unknown 28.2
1817 Female, age 42, unknown 27.0
1816 Male, age 51, unknown 26.2
2273 Male, age 74, both hemispheres 24.9
2224 Female, age 72, unknown 24.7
1944 Female, age 72, unknown 24.3
Red nucleus
nTPM: 33.4
2588 Male, age 74, left hemisphere 37.7
1904 Male, age 53, unknown 35.4
2584 Male, age 75, left hemisphere 35.4
2769 Male, age 72, unknown 35.2
1865 Male, age 51, unknown 34.2
2227 Male, age 72, unknown 34.0
2823 Male, age 76, right hemisphere 33.2
2503 Female, age 72, unknown 32.8
2785 Male, age 18, unknown 32.0
1954 Female, age 42, unknown 31.0
1821 Female, age 72, unknown 30.5
2725 Female, age 75, unknown 29.1
Substantia nigra
nTPM: 29.2
2583 Male, age 75, right hemisphere 33.0
2409 Female, age 72, unknown 31.7
1851 Male, age 51, unknown 30.1
1941 Male, age 53, unknown 30.0
1916 Female, age 42, unknown 29.6
2699 Male, age 18, unknown 29.0
2590 Female, age 75, unknown 27.8
2665 Male, age 74, both hemispheres 27.8
1889 Female, age 72, unknown 26.8
2241 Male, age 72, unknown 25.9
Superior colliculus
nTPM: 28.6
2664 Male, age 75, both hemispheres 31.3
2668 Female, age 75, unknown 30.5
1913 Female, age 42, unknown 29.9
1995 Male, age 72, unknown 28.8
1839 Male, age 51, unknown 28.7
2587 Male, age 74, left hemisphere 27.8
1796 Male, age 53, unknown 27.6
2087 Female, age 72, unknown 27.3
2261 Male, age 18, unknown 27.2
1895 Male, age 76, right hemisphere 26.6
Ventral tegmental area
nTPM: 29.5
2223 Female, age 72, unknown 33.3
2410 Female, age 72, unknown 31.5
2021 Male, age 53, unknown 28.8
1942 Male, age 51, unknown 28.7
2218 Male, age 76, both hemispheres 27.8
1915 Female, age 42, unknown 27.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.9
Samples: 139

Max nTPM: 53.1
Min nTPM: 18.7
Std nTPM: 6.0
Median nTPM: 32.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 53.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 51.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 50.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 45.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 43.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 43.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 42.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 42.0
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 41.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 40.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 39.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.3
FF:10158-103A5 76 years, female 67.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.2
Pig sample Sample description nTPM
Midbrain
nTPM: 13.4
Samples: 4

Max nTPM: 15.8
Min nTPM: 10.7
Sample A Female 13.8
Sample B Female 10.7
Sample C Male 15.8
Sample D Male 13.3
Periaqueductal gray
nTPM: 10.5
Samples: 3

Max nTPM: 11.8
Min nTPM: 9.1
Sample B Female 10.5
Sample C Male 11.8
Sample D Male 9.1
Substantia nigra
nTPM: 12.4
Samples: 4

Max nTPM: 15.5
Min nTPM: 10.9
Sample A Female 15.5
Sample B Female 10.9
Sample C Male 12.1
Sample D Male 11.0
Superior colliculi
nTPM: 14.2
Samples: 4

Max nTPM: 15.6
Min nTPM: 12.6
Sample A Female 15.6
Sample B Female 12.6
Sample C Male 15.0
Sample D Male 13.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 48.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.0
Samples: 4

Max nTPM: 52.9
Min nTPM: 43.1
Sample A Male 52.9
Sample B Male 49.4
Sample C Female 43.1
Sample D Female 46.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
601190 Antisense, RP_040831_01_H09, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.