We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MIF
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • MIF
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:195.8 nTPM
HPA:195.8 nTPM
GTEx:408.7 nTPM
FANTOM5:459.8 Scaled Tags Per Million
Pig:30.0 nTPM
Mouse:516.0 nTPM
Allen mouse:2.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 195.8
Sample id Sample description nTPM
Amygdala
nTPM: 171.5
2814 Male, age 76, right hemisphere 206.6
1987 Female, age 91, left hemisphere 189.0
2517 Female, age 94, left hemisphere 172.4
2514 Male, age 75, right hemisphere 150.6
2695 Female, age 67, right hemisphere 139.0
Basal amygdala
nTPM: 159.0
2110 Male, age 80, left hemisphere 191.5
2243 Female, age 91, right hemisphere 188.5
1955 Male, age 76, both hemispheres 174.3
2685 Female, age 94, left hemisphere 154.3
2827 Female, age 67, right hemisphere 123.6
2609 Male, age 75, right hemisphere 122.1
Central amygdala
nTPM: 175.0
2239 Male, age 80, left hemisphere 196.4
1905 Male, age 76, both hemispheres 195.3
2826 Female, age 94, left hemisphere 175.2
2515 Male, age 75, right hemisphere 165.0
2701 Female, age 91, right hemisphere 143.0
Corticomedial amygdala
nTPM: 172.2
2242 Female, age 91, right hemisphere 215.5
2535 Female, age 67, right hemisphere 181.6
2429 Female, age 94, left hemisphere 179.2
2829 Male, age 80, left hemisphere 179.0
2240 Male, age 76, both hemispheres 157.8
2428 Male, age 75, right hemisphere 120.1
Lateral amygdala
nTPM: 162.9
2534 Female, age 94, left hemisphere 231.7
1883 Male, age 76, both hemispheres 173.6
2255 Female, age 91, right hemisphere 163.3
2516 Male, age 75, right hemisphere 149.4
2256 Male, age 80, left hemisphere 144.0
2830 Female, age 67, right hemisphere 115.4
Stria terminalis, bed nucleus
nTPM: 195.8
1974 Female, age 91, both hemispheres 228.7
2201 Male, age 74, unknown 182.4
2486 Female, age 94, both hemispheres 176.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 408.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 408.7
Samples: 152

Max nTPM: 1463.1
Min nTPM: 150.6
Std nTPM: 180.8
Median nTPM: 374.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1463.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1232.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1148.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 955.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 708.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 690.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 684.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 680.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 674.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 638.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 600.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 591.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 590.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 583.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 583.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 580.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 576.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 573.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 570.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 567.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 562.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 555.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 552.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 539.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 527.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 525.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 525.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 509.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 509.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 508.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 503.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 502.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 500.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 498.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 496.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 492.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 489.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 487.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 482.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 469.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 465.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 458.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 450.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 450.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 441.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 441.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 438.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 437.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 437.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 435.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 435.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 432.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 430.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 429.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 428.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 426.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 423.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 422.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 422.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 421.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 421.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 417.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 416.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 414.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 412.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 409.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 407.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 405.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 404.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 396.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 392.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 389.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 388.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 384.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 377.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 375.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 374.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 371.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 371.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 366.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 365.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 364.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 363.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 363.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 363.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 360.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 358.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 354.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 352.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 348.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 347.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 344.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 342.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 341.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 340.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 340.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 336.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 335.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 333.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 333.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 333.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 329.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 328.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 327.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 327.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 320.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 320.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 314.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 314.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 312.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 306.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 304.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 304.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 302.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 301.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 300.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 296.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 294.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 294.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 293.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 291.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 289.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 281.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 278.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 270.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 269.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 269.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 268.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 264.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 259.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 256.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 256.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 254.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 252.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 248.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 236.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 223.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 220.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 219.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 217.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 215.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 200.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 197.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 196.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 194.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 189.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 186.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 184.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 180.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 172.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 161.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 150.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 459.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 459.8
FF:10151-102I7 76 years, female 459.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 30.0
Pig sample Sample description nTPM
Amygdala
nTPM: 30.0
Samples: 4

Max nTPM: 47.1
Min nTPM: 23.4
Sample A Female 47.1
Sample B Female 23.4
Sample C Male 25.3
Sample D Male 24.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 516.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 516.0
Samples: 4

Max nTPM: 547.9
Min nTPM: 484.3
Sample A Male 547.9
Sample B Male 489.3
Sample C Female 542.4
Sample D Female 484.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.9
2407 Antisense, RP_Baylor_102906, Mouse strain C57BL/6J (56 days, male) 2.9
2408 Antisense, RP_Baylor_102906, Mouse strain C57BL/6J (56 days, male) 0.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.