We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MIF
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • MIF
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:250.8 nTPM
HPA:250.8 nTPM
GTEx:461.2 nTPM
FANTOM5:1116.7 Scaled Tags Per Million
Pig:45.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 250.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 211.1
1981 Female, age 72, midline 272.6
2565 Male, age 75, midline 229.4
2194 Female, age 79, both hemispheres 220.9
2816 Male, age 47, midline 201.5
2048 Male, age 55, midline 131.1
Cervical spinal cord, dorsal horn
nTPM: 250.8
2296 Male, age 66, both hemispheres 334.4
2173 Female, age 72, unknown 285.6
2069 Male, age 47, both hemispheres 275.5
2721 Male, age 90, both hemispheres 226.1
2297 Male, age 75, both hemispheres 196.5
1877 Male, age 55, unknown 186.3
Cervical spinal cord, ventral horn
nTPM: 223.6
2480 Male, age 75, both hemispheres 271.0
2098 Female, age 72, unknown 249.6
2809 Male, age 90, both hemispheres 220.8
2068 Male, age 55, unknown 219.4
2295 Male, age 66, both hemispheres 198.4
2820 Female, age 79, both hemispheres 182.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 461.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 461.2
Samples: 159

Max nTPM: 902.8
Min nTPM: 144.1
Std nTPM: 163.1
Median nTPM: 416.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 902.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 896.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 853.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 817.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 802.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 795.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 790.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 779.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 771.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 761.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 759.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 757.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 748.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 735.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 725.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 716.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 705.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 704.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 693.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 682.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 671.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 670.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 646.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 646.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 638.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 637.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 625.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 617.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 615.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 613.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 606.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 601.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 590.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 587.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 587.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 578.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 574.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 569.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 567.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 567.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 561.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 553.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 551.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 549.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 545.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 545.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 545.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 533.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 525.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 519.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 518.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 516.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 512.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 508.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 504.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 503.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 503.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 500.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 499.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 495.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 494.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 493.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 487.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 479.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 476.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 471.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 465.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 460.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 459.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 458.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 455.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 454.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 452.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 452.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 447.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 437.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 436.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 435.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 419.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 416.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 416.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 415.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 413.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 413.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 413.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 412.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 411.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 411.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 408.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 407.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 406.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 400.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 399.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 398.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 398.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 398.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 396.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 392.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 386.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 381.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 379.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 379.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 373.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 372.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 372.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 370.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 368.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 368.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 367.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 361.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 360.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 356.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 352.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 352.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 345.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 341.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 340.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 339.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 335.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 333.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 332.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 329.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 324.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 320.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 319.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 318.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 318.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 317.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 316.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 315.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 308.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 305.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 305.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 301.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 296.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 296.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 295.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 295.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 293.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 292.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 290.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 287.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 284.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 282.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 280.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 276.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 271.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 264.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 264.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 262.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 253.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 251.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 234.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 222.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 219.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 181.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 176.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 170.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 144.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1116.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1116.7
FF:10181-103D1 60 years, female 1899.0
FF:10159-103A6 76 years, female 334.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 45.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 37.3
Samples: 4

Max nTPM: 40.9
Min nTPM: 33.3
Sample A Female 37.5
Sample B Female 33.3
Sample C Male 40.9
Sample D Male 37.4
Ventral spinal cord
nTPM: 45.5
Samples: 4

Max nTPM: 53.5
Min nTPM: 34.0
Sample A Female 42.4
Sample B Female 52.0
Sample C Male 53.5
Sample D Male 34.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.