MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:224.7 nTPM
HPA:224.7 nTPM
GTEx:327.1 nTPM
FANTOM5:461.9 Scaled Tags Per Million
Pig:52.0 nTPM
Mouse:185.7 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 224.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 143.1
2411 Female, age 72, unknown 159.4
2019 Male, age 18, unknown 158.4
2828 Female, age 72, unknown 158.0
1870 Female, age 42, unknown 156.5
2219 Male, age 76, both hemispheres 144.4
1827 Male, age 72, unknown 144.2
1830 Male, age 51, unknown 135.5
1833 Male, age 53, unknown 134.6
2586 Male, age 75, left hemisphere 127.8
2666 Male, age 74, left hemisphere 112.5
Dorsal raphe nucleus
nTPM: 171.8
2298 Female, age 72, unknown 225.0
2750 Male, age 76, both hemispheres 184.3
2047 Male, age 72, unknown 174.8
1828 Male, age 53, unknown 148.3
2016 Female, age 72, unknown 126.5
Inferior colliculus
nTPM: 159.7
2097 Female, age 72, unknown 199.0
1890 Male, age 53, unknown 160.8
1848 Female, age 42, unknown 146.0
2849 Male, age 72, unknown 133.0
Median raphe nucleus
nTPM: 224.7
2220 Male, age 76, midline 224.7
Pedunculopontine tegmental nucleus
nTPM: 181.8
2334 Male, age 80, both hemispheres 197.8
2338 Male, age 61, both hemispheres 177.9
1921 Female, age 85, both hemispheres 169.5
Periaquaductal grey, anterior
nTPM: 201.8
1795 Male, age 51, unknown 219.3
1947 Male, age 18, unknown 198.8
2502 Female, age 75, unknown 187.3
Periaquaductal grey, dorsal
nTPM: 142.0
2850 Male, age 76, both hemispheres 154.7
1840 Male, age 53, unknown 148.0
1831 Male, age 72, unknown 133.9
2464 Female, age 72, unknown 131.4
Periaquaductal grey, lateral
nTPM: 171.0
2272 Male, age 74, both hemispheres 212.9
2140 Male, age 76, both hemispheres 156.9
2053 Male, age 18, unknown 143.2
Pretectal area
nTPM: 175.5
2007 Male, age 72, unknown 203.3
1817 Female, age 42, unknown 200.6
2224 Female, age 72, unknown 198.4
2273 Male, age 74, both hemispheres 196.3
1816 Male, age 51, unknown 195.9
1944 Female, age 72, unknown 182.3
2667 Female, age 75, unknown 164.0
1815 Male, age 53, unknown 162.5
2825 Male, age 18, unknown 147.6
2316 Male, age 76, right hemisphere 142.2
2407 Male, age 75, both hemispheres 137.4
Red nucleus
nTPM: 160.5
2785 Male, age 18, unknown 190.7
2769 Male, age 72, unknown 181.8
2227 Male, age 72, unknown 181.6
2725 Female, age 75, unknown 176.7
2503 Female, age 72, unknown 168.9
2584 Male, age 75, left hemisphere 167.7
1821 Female, age 72, unknown 160.7
1865 Male, age 51, unknown 151.8
1954 Female, age 42, unknown 146.0
1904 Male, age 53, unknown 145.9
2823 Male, age 76, right hemisphere 143.8
2588 Male, age 74, left hemisphere 110.4
Substantia nigra
nTPM: 152.2
1916 Female, age 42, unknown 194.0
1889 Female, age 72, unknown 176.6
1941 Male, age 53, unknown 164.9
1851 Male, age 51, unknown 164.3
2583 Male, age 75, right hemisphere 153.4
2590 Female, age 75, unknown 152.0
2665 Male, age 74, both hemispheres 131.8
2409 Female, age 72, unknown 129.6
2241 Male, age 72, unknown 129.3
2699 Male, age 18, unknown 126.6
Superior colliculus
nTPM: 153.7
1796 Male, age 53, unknown 200.4
2261 Male, age 18, unknown 188.2
2087 Female, age 72, unknown 177.7
1913 Female, age 42, unknown 155.9
2587 Male, age 74, left hemisphere 155.5
2668 Female, age 75, unknown 151.2
1995 Male, age 72, unknown 137.9
1839 Male, age 51, unknown 133.7
1895 Male, age 76, right hemisphere 126.4
2664 Male, age 75, both hemispheres 110.3
Ventral tegmental area
nTPM: 188.8
2223 Female, age 72, unknown 248.9
2218 Male, age 76, both hemispheres 204.8
1942 Male, age 51, unknown 172.9
1915 Female, age 42, unknown 171.1
2410 Female, age 72, unknown 169.6
2021 Male, age 53, unknown 165.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 327.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 327.1
Samples: 139

Max nTPM: 722.8
Min nTPM: 116.1
Std nTPM: 87.1
Median nTPM: 322.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 722.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 573.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 526.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 495.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 489.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 488.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 480.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 474.7
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 462.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 456.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 455.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 461.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 461.9
FF:10158-103A5 76 years, female 461.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 52.0
Pig sample Sample description nTPM
Midbrain
nTPM: 46.1
Samples: 4

Max nTPM: 59.2
Min nTPM: 37.5
Sample A Female 43.0
Sample B Female 37.5
Sample C Male 59.2
Sample D Male 44.7
Periaqueductal gray
nTPM: 35.1
Samples: 3

Max nTPM: 44.0
Min nTPM: 30.4
Sample B Female 30.8
Sample C Male 44.0
Sample D Male 30.4
Substantia nigra
nTPM: 42.5
Samples: 4

Max nTPM: 63.2
Min nTPM: 22.7
Sample A Female 63.2
Sample B Female 34.8
Sample C Male 49.3
Sample D Male 22.7
Superior colliculi
nTPM: 52.0
Samples: 4

Max nTPM: 64.9
Min nTPM: 41.6
Sample A Female 64.9
Sample B Female 42.8
Sample C Male 58.6
Sample D Male 41.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 185.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 185.7
Samples: 4

Max nTPM: 244.6
Min nTPM: 147.9
Sample A Male 244.6
Sample B Male 165.3
Sample C Female 147.9
Sample D Female 185.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
2407 Antisense, RP_Baylor_102906, Mouse strain C57BL/6J (56 days, male) 1.6
2408 Antisense, RP_Baylor_102906, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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