MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:389.8 nTPM
HPA:389.8 nTPM
GTEx:1135.3 nTPM
FANTOM5:50.4 Scaled Tags Per Million
Mouse:408.4 nTPM
Allen mouse:7.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 389.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 385.9
2666 Male, age 74, left hemisphere 391.1
2019 Male, age 18, unknown 389.9
2828 Female, age 72, unknown 387.7
1827 Male, age 72, unknown 387.5
1833 Male, age 53, unknown 387.4
1870 Female, age 42, unknown 387.4
1830 Male, age 51, unknown 383.3
2219 Male, age 76, both hemispheres 383.1
2411 Female, age 72, unknown 381.0
2586 Male, age 75, left hemisphere 380.0
Dorsal raphe nucleus
nTPM: 385.7
2298 Female, age 72, unknown 389.5
2016 Female, age 72, unknown 386.7
1828 Male, age 53, unknown 384.8
2047 Male, age 72, unknown 383.9
2750 Male, age 76, both hemispheres 383.5
Inferior colliculus
nTPM: 386.3
2097 Female, age 72, unknown 390.3
1890 Male, age 53, unknown 388.9
1848 Female, age 42, unknown 383.0
2849 Male, age 72, unknown 383.0
Median raphe nucleus
nTPM: 382.7
2220 Male, age 76, midline 382.7
Pedunculopontine tegmental nucleus
nTPM: 386.1
2338 Male, age 61, both hemispheres 388.6
1921 Female, age 85, both hemispheres 385.5
2334 Male, age 80, both hemispheres 384.3
Periaquaductal grey, anterior
nTPM: 382.6
1947 Male, age 18, unknown 383.8
1795 Male, age 51, unknown 383.6
2502 Female, age 75, unknown 380.5
Periaquaductal grey, dorsal
nTPM: 385.5
1831 Male, age 72, unknown 389.4
2464 Female, age 72, unknown 386.2
1840 Male, age 53, unknown 384.6
2850 Male, age 76, both hemispheres 381.9
Periaquaductal grey, lateral
nTPM: 382.8
2140 Male, age 76, both hemispheres 388.4
2053 Male, age 18, unknown 382.1
2272 Male, age 74, both hemispheres 377.8
Pretectal area
nTPM: 385.5
2316 Male, age 76, right hemisphere 390.6
2407 Male, age 75, both hemispheres 388.8
1815 Male, age 53, unknown 388.3
1817 Female, age 42, unknown 386.5
1944 Female, age 72, unknown 386.4
2825 Male, age 18, unknown 385.7
1816 Male, age 51, unknown 385.5
2224 Female, age 72, unknown 384.0
2007 Male, age 72, unknown 382.2
2667 Female, age 75, unknown 382.0
2273 Male, age 74, both hemispheres 380.8
Red nucleus
nTPM: 388.0
2823 Male, age 76, right hemisphere 395.6
2725 Female, age 75, unknown 394.3
1865 Male, age 51, unknown 390.8
2584 Male, age 75, left hemisphere 389.1
1954 Female, age 42, unknown 387.3
1821 Female, age 72, unknown 386.7
1904 Male, age 53, unknown 386.7
2227 Male, age 72, unknown 386.7
2503 Female, age 72, unknown 385.2
2769 Male, age 72, unknown 384.9
2588 Male, age 74, left hemisphere 384.8
2785 Male, age 18, unknown 383.9
Substantia nigra
nTPM: 389.8
2241 Male, age 72, unknown 401.4
2583 Male, age 75, right hemisphere 393.0
2665 Male, age 74, both hemispheres 391.8
2590 Female, age 75, unknown 389.8
1916 Female, age 42, unknown 388.7
2409 Female, age 72, unknown 387.8
2699 Male, age 18, unknown 387.5
1889 Female, age 72, unknown 386.9
1851 Male, age 51, unknown 386.8
1941 Male, age 53, unknown 384.4
Superior colliculus
nTPM: 386.4
2587 Male, age 74, left hemisphere 392.6
2664 Male, age 75, both hemispheres 389.2
2668 Female, age 75, unknown 387.4
1913 Female, age 42, unknown 387.2
1796 Male, age 53, unknown 385.9
2261 Male, age 18, unknown 385.5
1995 Male, age 72, unknown 385.0
1895 Male, age 76, right hemisphere 384.8
1839 Male, age 51, unknown 384.6
2087 Female, age 72, unknown 382.2
Ventral tegmental area
nTPM: 385.9
1915 Female, age 42, unknown 392.1
1942 Male, age 51, unknown 387.9
2021 Male, age 53, unknown 385.5
2218 Male, age 76, both hemispheres 385.1
2223 Female, age 72, unknown 383.6
2410 Female, age 72, unknown 381.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1135.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1135.3
Samples: 139

Max nTPM: 4302.0
Min nTPM: 351.8
Std nTPM: 488.6
Median nTPM: 1052.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4302.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2773.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2466.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2386.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2220.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1915.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1912.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1901.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1828.6
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1794.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1791.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.4
FF:10158-103A5 76 years, female 50.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 408.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 408.4
Samples: 4

Max nTPM: 445.6
Min nTPM: 386.2
Sample A Male 445.6
Sample B Male 398.7
Sample C Female 386.2
Sample D Female 403.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.8
68744648 Antisense, RP_050208_01_C11, Mouse strain C57BL/6J (56 days, male) 7.8

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