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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:652.7 nTPM
HPA:652.7 nTPM
FANTOM5:91.1 Scaled Tags Per Million
Pig:69.1 nTPM
Mouse:287.6 nTPM
Allen mouse:1.5 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 652.7
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 634.9
2396 Male, age 61, right hemisphere 651.9
2032 Female, age 42, unknown 635.7
2497 Male, age 66, unknown 617.2
Centromedial thalamic nucleus
nTPM: 631.8
2401 Male, age 76, right hemisphere 669.0
2279 Female, age 85, left hemisphere 594.7
Habenula
nTPM: 642.0
1957 Male, age 80, both hemispheres 677.8
2203 Male, age 61, left hemisphere 643.0
2276 Male, age 66, unknown 629.4
2252 Male, age 62, unknown 617.8
Lateral geniculate body
nTPM: 652.7
2399 Male, age 61, left hemisphere 678.7
1953 Male, age 62, unknown 678.2
2106 Female, age 67, right hemisphere 666.4
2035 Female, age 72, unknown 664.6
2857 Male, age 74, right hemisphere 644.4
2659 Male, age 66, unknown 637.2
2575 Female, age 94, right hemisphere 632.3
2841 Male, age 80, both hemispheres 619.4
Lateral thalamic nuclei
nTPM: 640.0
2765 Female, age 67, both hemispheres 652.8
2573 Female, age 94, left hemisphere 650.5
1903 Male, age 76, left hemisphere 643.3
2577 Male, age 74, both hemispheres 630.3
2661 Female, age 72, unknown 623.0
Medial dorsal thalamic nucleus
nTPM: 643.5
1971 Male, age 61, right hemisphere 668.7
1859 Male, age 76, both hemispheres 665.5
2498 Male, age 66, unknown 658.5
2572 Female, age 94, right hemisphere 658.3
1810 Male, age 48, unknown 652.3
2026 Male, age 62, unknown 649.5
2283 Male, age 80, right hemisphere 643.4
2402 Female, age 67, both hemispheres 638.7
1930 Female, age 42, unknown 635.2
2039 Female, age 72, unknown 631.2
2576 Male, age 74, both hemispheres 630.5
2492 Male, age 75, right hemisphere 626.3
2660 Female, age 72, unknown 606.8
Medial geniculate body
nTPM: 635.5
1811 Female, age 42, unknown 669.9
2650 Female, age 94, left hemisphere 659.9
2657 Male, age 74, right hemisphere 642.8
2049 Male, age 76, both hemispheres 624.1
2207 Male, age 80, right hemisphere 622.4
2571 Male, age 75, right hemisphere 616.4
2217 Female, age 72, unknown 613.1
Nucleus reuniens
nTPM: 623.9
2212 Female, age 67, left hemisphere 665.2
2205 Male, age 80, left hemisphere 618.2
2210 Female, age 85, left hemisphere 588.4
Nucleus rhomboideus
nTPM: 621.7
2206 Male, age 80, both hemispheres 648.4
2213 Female, age 67, left hemisphere 629.3
2280 Female, age 85, left hemisphere 587.5
Posterior thalamic nucleus
nTPM: 638.5
2649 Female, age 94, both hemispheres 663.3
2266 Male, age 76, right hemisphere 631.5
2495 Female, age 67, right hemisphere 630.1
2655 Male, age 74, right hemisphere 629.2
Pulvinar
nTPM: 647.8
2398 Male, age 61, left hemisphere 670.4
1932 Male, age 80, right hemisphere 664.5
1972 Male, age 62, unknown 663.5
2724 Male, age 74, right hemisphere 648.9
2214 Male, age 76, right hemisphere 647.1
2499 Male, age 66, unknown 640.5
2582 Female, age 72, unknown 638.3
2496 Female, age 67, right hemisphere 637.4
1929 Male, age 48, unknown 637.1
1899 Female, age 42, unknown 630.7
Subthalamic nucleus
nTPM: 621.1
2406 Female, age 72, unknown 636.6
2282 Male, age 61, both hemispheres 635.0
2124 Male, age 62, unknown 628.5
2658 Male, age 74, both hemispheres 623.1
2779 Female, age 42, unknown 621.7
2275 Male, age 66, unknown 619.6
2056 Female, age 72, unknown 606.3
2216 Male, age 48, unknown 598.2
Ventral posterolateral thalamic nucleus
nTPM: 635.8
2740 Male, age 76, right hemisphere 656.6
2397 Male, age 61, right hemisphere 653.0
2197 Male, age 80, both hemispheres 649.8
2570 Male, age 75, right hemisphere 630.7
2578 Male, age 74, both hemispheres 621.3
2581 Female, age 72, unknown 603.3
Ventral posteromedial thalamic nucleus
nTPM: 630.9
2202 Male, age 61, left hemisphere 666.8
2758 Male, age 80, both hemispheres 638.9
2127 Male, age 76, right hemisphere 619.1
2653 Male, age 74, both hemispheres 615.2
2281 Male, age 75, right hemisphere 614.3
Ventral thalamic nuclei
nTPM: 632.4
1860 Male, age 76, both hemispheres 669.0
1845 Male, age 48, unknown 663.7
1912 Female, age 42, unknown 638.8
2285 Male, age 62, unknown 630.7
2580 Male, age 66, unknown 628.8
2204 Male, age 80, both hemispheres 627.7
2858 Female, age 72, unknown 619.2
2652 Male, age 74, left hemisphere 607.7
2291 Female, age 72, unknown 605.9
Ventromedial nucleus
nTPM: 627.2
1982 Female, age 72, unknown 639.9
1822 Female, age 42, unknown 614.5
Zona incerta
nTPM: 614.9
2215 Male, age 66, unknown 624.8
2822 Male, age 74, right hemisphere 620.6
2208 Male, age 80, right hemisphere 620.3
2403 Male, age 62, unknown 608.9
2663 Female, age 72, unknown 599.7

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 91.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 91.1
FF:10154-103A1 76 years, female 91.1

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 69.1
Pig sample Sample description nTPM
Thalamus
nTPM: 69.1
Samples: 4

Max nTPM: 96.0
Min nTPM: 50.7
Sample A Female 96.0
Sample B Female 54.2
Sample C Male 75.5
Sample D Male 50.7

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 287.6
Mouse sample Sample description nTPM
Thalamus
nTPM: 287.6
Samples: 4

Max nTPM: 312.5
Min nTPM: 261.4
Sample A Male 296.0
Sample B Male 280.3
Sample C Female 312.5
Sample D Female 261.4

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 1.5
75198094 Antisense, RP_060502_01_F10, Mouse strain C57BL/6J (56 days, male) 1.5

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