MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:648.0 nTPM
HPA:648.0 nTPM
GTEx:540.4 nTPM
FANTOM5:86.8 Scaled Tags Per Million
Pig:66.6 nTPM
Mouse:266.0 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 648.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 618.4
2019 Male, age 18, unknown 630.5
1827 Male, age 72, unknown 629.1
2219 Male, age 76, both hemispheres 621.6
1870 Female, age 42, unknown 620.3
2828 Female, age 72, unknown 620.0
2586 Male, age 75, left hemisphere 616.5
1833 Male, age 53, unknown 613.1
2666 Male, age 74, left hemisphere 611.5
1830 Male, age 51, unknown 611.0
2411 Female, age 72, unknown 610.3
Dorsal raphe nucleus
nTPM: 623.4
1828 Male, age 53, unknown 635.4
2298 Female, age 72, unknown 633.3
2047 Male, age 72, unknown 627.1
2750 Male, age 76, both hemispheres 617.3
2016 Female, age 72, unknown 603.9
Inferior colliculus
nTPM: 628.0
2097 Female, age 72, unknown 631.7
1890 Male, age 53, unknown 630.5
1848 Female, age 42, unknown 628.4
2849 Male, age 72, unknown 621.3
Median raphe nucleus
nTPM: 629.3
2220 Male, age 76, midline 629.3
Pedunculopontine tegmental nucleus
nTPM: 648.0
2338 Male, age 61, both hemispheres 663.3
1921 Female, age 85, both hemispheres 645.2
2334 Male, age 80, both hemispheres 635.5
Periaquaductal grey, anterior
nTPM: 622.8
1947 Male, age 18, unknown 629.2
1795 Male, age 51, unknown 628.6
2502 Female, age 75, unknown 610.7
Periaquaductal grey, dorsal
nTPM: 617.5
2850 Male, age 76, both hemispheres 635.7
1840 Male, age 53, unknown 614.7
1831 Male, age 72, unknown 610.5
2464 Female, age 72, unknown 609.0
Periaquaductal grey, lateral
nTPM: 618.7
2272 Male, age 74, both hemispheres 624.9
2053 Male, age 18, unknown 621.8
2140 Male, age 76, both hemispheres 609.5
Pretectal area
nTPM: 642.6
1817 Female, age 42, unknown 671.6
1816 Male, age 51, unknown 665.8
2007 Male, age 72, unknown 663.8
2667 Female, age 75, unknown 659.5
1944 Female, age 72, unknown 657.7
1815 Male, age 53, unknown 645.6
2224 Female, age 72, unknown 631.9
2273 Male, age 74, both hemispheres 624.9
2407 Male, age 75, both hemispheres 621.1
2825 Male, age 18, unknown 618.9
2316 Male, age 76, right hemisphere 608.2
Red nucleus
nTPM: 623.7
1821 Female, age 72, unknown 658.6
2725 Female, age 75, unknown 638.2
2823 Male, age 76, right hemisphere 634.8
2503 Female, age 72, unknown 627.1
2785 Male, age 18, unknown 624.6
1865 Male, age 51, unknown 619.7
2227 Male, age 72, unknown 619.0
1954 Female, age 42, unknown 618.0
2769 Male, age 72, unknown 617.2
1904 Male, age 53, unknown 611.9
2584 Male, age 75, left hemisphere 607.7
2588 Male, age 74, left hemisphere 607.3
Substantia nigra
nTPM: 635.4
1916 Female, age 42, unknown 660.5
1889 Female, age 72, unknown 652.4
1851 Male, age 51, unknown 642.7
1941 Male, age 53, unknown 638.2
2409 Female, age 72, unknown 635.9
2665 Male, age 74, both hemispheres 634.4
2241 Male, age 72, unknown 634.0
2699 Male, age 18, unknown 631.2
2590 Female, age 75, unknown 615.1
2583 Male, age 75, right hemisphere 609.8
Superior colliculus
nTPM: 624.0
2587 Male, age 74, left hemisphere 639.3
2087 Female, age 72, unknown 635.5
1796 Male, age 53, unknown 631.6
1895 Male, age 76, right hemisphere 630.2
2668 Female, age 75, unknown 626.2
2261 Male, age 18, unknown 622.2
1839 Male, age 51, unknown 619.0
1913 Female, age 42, unknown 614.8
1995 Male, age 72, unknown 614.5
2664 Male, age 75, both hemispheres 607.2
Ventral tegmental area
nTPM: 627.4
2218 Male, age 76, both hemispheres 643.1
1915 Female, age 42, unknown 637.9
2410 Female, age 72, unknown 632.6
2223 Female, age 72, unknown 623.5
2021 Male, age 53, unknown 616.4
1942 Male, age 51, unknown 611.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 540.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 540.4
Samples: 139

Max nTPM: 958.5
Min nTPM: 233.9
Std nTPM: 139.0
Median nTPM: 522.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 958.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 950.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 903.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 880.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 848.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 832.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 818.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 814.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 800.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 800.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 764.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 86.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.8
FF:10158-103A5 76 years, female 86.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 66.6
Pig sample Sample description nTPM
Midbrain
nTPM: 63.2
Samples: 4

Max nTPM: 72.5
Min nTPM: 50.1
Sample A Female 66.0
Sample B Female 50.1
Sample C Male 72.5
Sample D Male 64.0
Periaqueductal gray
nTPM: 47.3
Samples: 3

Max nTPM: 54.4
Min nTPM: 41.3
Sample B Female 46.2
Sample C Male 54.4
Sample D Male 41.3
Substantia nigra
nTPM: 57.3
Samples: 4

Max nTPM: 77.3
Min nTPM: 37.5
Sample A Female 77.3
Sample B Female 50.5
Sample C Male 64.0
Sample D Male 37.5
Superior colliculi
nTPM: 66.6
Samples: 4

Max nTPM: 89.1
Min nTPM: 49.0
Sample A Female 89.1
Sample B Female 49.0
Sample C Male 74.1
Sample D Male 54.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 266.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 266.0
Samples: 4

Max nTPM: 294.7
Min nTPM: 238.8
Sample A Male 294.7
Sample B Male 247.1
Sample C Female 238.8
Sample D Female 283.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
75198094 Antisense, RP_060502_01_F10, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.